Variant report

Variant	esv1798878
Chromosome Location	chr10:26339336-26355576
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 778 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:778 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11819181	chr10:26339336-26339337	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs200500003	chr10:26339384-26339385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557019891	chr10:26339429-26339430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs148390740	chr10:26339473-26339474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs76627323	chr10:26339499-26339500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs570918276	chr10:26339507-26339508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs56278522	chr10:26339519-26339520	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs550034295	chr10:26339523-26339524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs142700680	chr10:26339529-26339530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535330128	chr10:26339538-26339539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548861747	chr10:26339563-26339564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565639091	chr10:26339572-26339573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs534277846	chr10:26339576-26339577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs557344512	chr10:26339600-26339601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540368471	chr10:26339604-26339605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs115556326	chr10:26339649-26339650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs17738883	chr10:26339658-26339659	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs34746969	chr10:26339659-26339660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576572759	chr10:26339679-26339680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542491161	chr10:26339680-26339681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs184608862	chr10:26339686-26339687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112027250	chr10:26339721-26339722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs11014926	chr10:26339725-26339726	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs573004023	chr10:26339732-26339733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs181488904	chr10:26339762-26339763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564494847	chr10:26339776-26339777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533205136	chr10:26339816-26339817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550238328	chr10:26339826-26339827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs76314746	chr10:26339874-26339875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs75427261	chr10:26339929-26339930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139971183	chr10:26339963-26339964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185398888	chr10:26340054-26340055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs143407285	chr10:26340157-26340158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551293340	chr10:26340176-26340177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs189565258	chr10:26340191-26340192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111550441	chr10:26340197-26340198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551517671	chr10:26340270-26340271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs181564491	chr10:26340345-26340346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs17666263	chr10:26340365-26340366	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs575185801	chr10:26340371-26340372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536016678	chr10:26340403-26340404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs17738907	chr10:26340429-26340430	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs564171826	chr10:26340456-26340457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs150044484	chr10:26340462-26340463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186377180	chr10:26340473-26340474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200193529	chr10:26340476-26340477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs367696648	chr10:26340478-26340479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146720779	chr10:26340546-26340547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs74126361	chr10:26340555-26340556	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs368425505	chr10:26340594-26340595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26334200-26342600	Weak transcription	Aorta	Aorta
2	chr10:26338200-26341200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26338400-26340800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:26340800-26341800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:26341200-26343000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:26341800-26346800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:26342600-26343000	ZNF genes & repeats	Aorta	Aorta
8	chr10:26343000-26344200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:26344000-26344200	ZNF genes & repeats	Aorta	Aorta
10	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:26346800-26347000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
12	chr10:26351600-26352800	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr10:26352400-26353200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:26352800-26358400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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