Variant report
| Variant | esv1802062 |
|---|---|
| Chromosome Location | chr7:57338057-57342226 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs544673509 | chr7:57341444-57341445 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs532909501 | chr7:57341457-57341458 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs563074808 | chr7:57341499-57341500 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs181669773 | chr7:57341528-57341529 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs62466186 | chr7:57341551-57341552 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs189590919 | chr7:57341554-57341555 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs182284905 | chr7:57341555-57341556 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs144199134 | chr7:57341564-57341565 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs10275297 | chr7:57341666-57341667 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs146757771 | chr7:57341667-57341668 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs4298445 | chr7:57341716-57341717 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 12 | rs186133756 | chr7:57341722-57341723 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs549438302 | chr7:57341735-57341736 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs551086198 | chr7:57341754-57341755 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs190985013 | chr7:57341797-57341798 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs4364586 | chr7:57341816-57341817 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs139196196 | chr7:57341913-57341914 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs540638611 | chr7:57341933-57341934 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs73701747 | chr7:57341936-57341937 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs76769499 | chr7:57341940-57341941 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs560853193 | chr7:57341945-57341946 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs11772265 | chr7:57341954-57341955 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 23 | rs533982055 | chr7:57341983-57341984 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs558923106 | chr7:57341992-57341993 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs7779377 | chr7:57342041-57342042 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 26 | rs141404622 | chr7:57342076-57342077 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs562934756 | chr7:57342089-57342090 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs575119112 | chr7:57342123-57342124 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs143924854 | chr7:57342127-57342128 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs560668510 | chr7:57342128-57342129 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs11769554 | chr7:57342158-57342159 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs527976490 | chr7:57342215-57342216 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs552686437 | chr7:57342221-57342222 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:82)
| Disease | PMID | Source |
|---|---|---|
| Neuroblastoma | 18923191 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Glioma | 21971842 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Oral cancer | 21386901 | CNVD |
| colon cancer | 17210682 | CNVD |
| Lung adenocarcinoma | 21810691 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Hypothalamic hamartomas | 18252217 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Peripheral t-cell lymphoma | 19118030 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Seminomas | 18059402 | CNVD |
| Testicular cancer | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Autism | 19415332 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Malaria | 21533027 | CNVD |
| Melanoma | 18172304 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| head and neck squamous cell carcinoma | 19289630 | CNVD |
| Stenocardia | 21860640 | CNVD |
| Vasospasm | 21860640 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Autism | 22495311 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Cancer | 21183584 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Williams-beuren syndrome | 22470819 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Gastric cancer | 24379144 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Lung cancer | 18438408 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Breast cancer | 21364760 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Glioblastoma multiforme | 22291905 | CNVD |
| Glioblastoma multiforme | 19435819 | CNVD |
| Intracranial ependymoma | 16609018 | CNVD |
| Lung cancer | 21911935 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Colorectal cancer | 19455253 | CNVD |
| Lung cancer | 17925434 | CNVD |
| Glioma | 24330732 | CNVD |
| Lung adenocarcinoma | 23938291 | CNVD |
| Glioma | 17634744 | CNVD |
| Oral squamous cell carcinoma | 19276369 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Lung cancer | 20031968 | CNVD |
| Glioblastoma | 17090523 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Glioma | 17123091 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Medullary thyroid carcinoma | 18765511 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Williams Syndrome | 20824207 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:57341400-57343800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr7:57342000-57343200 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
