Variant report
Variant | esv1804084 |
---|---|
Chromosome Location | chr20:15702037-15712288 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs530757901 | chr20:15704229-15704230 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs548866304 | chr20:15704252-15704253 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs11906604 | chr20:15704255-15704256 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs528289122 | chr20:15704282-15704283 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs371647745 | chr20:15704284-15704285 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs77195278 | chr20:15704298-15704299 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs571678420 | chr20:15704318-15704319 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs201287684 | chr20:15704413-15704414 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs147371678 | chr20:15704484-15704485 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs140926551 | chr20:15704637-15704638 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs569278446 | chr20:15704638-15704639 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs12106137 | chr20:15704647-15704648 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
13 | rs554981537 | chr20:15704649-15704650 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs181023758 | chr20:15704659-15704660 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs534154900 | chr20:15704698-15704699 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs185082349 | chr20:15704729-15704730 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs59000635 | chr20:15704779-15704780 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs190615172 | chr20:15704799-15704800 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs2179623 | chr20:15704813-15704814 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs375285198 | chr20:15704914-15704915 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs544674276 | chr20:15704953-15704954 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs184101592 | chr20:15704970-15704971 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs528267888 | chr20:15704984-15704985 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs187063538 | chr20:15704987-15704988 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Breast cancer | 16397240 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Wilms tumour | 21544195 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 16272173 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Oral cancer | 19627613 | CNVD |
colon cancer | 17210682 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Central neurocytomas | 17123091 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Gastric cancer | 17908304 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 22495311 | CNVD |
Glaucoma | 21310917 | CNVD |
Alagille syndrome | 22470819 | CNVD |
Lung cancer | 16773561 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Alagille syndrome | 17576883 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Leukemia | 18628472 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Kabuki syndrome | 21720541 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Neurocytoma | 17123091 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Cancer | 20164919 | CNVD |
Multiple sclerosis | 20663923 | CNVD |
Schizophrenia | 20663923 | CNVD |
brain infarct | 20663923 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164920 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-small cell lung cancer | 16651412 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15704200-15705000 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |