Variant report
Variant | esv1804195 |
---|---|
Chromosome Location | chr21:14453363-14497151 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:75)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BATF | chr21:14480770-14481109 | GM12878 | blood: | n/a | chr21:14480939-14480950 |
2 | BATF | chr21:14480794-14481018 | GM12878 | blood: | n/a | chr21:14480939-14480950 |
3 | CEBPB | chr21:14478744-14478794 | HepG2 | liver: | n/a | chr21:14478768-14478779 |
4 | CTCF | chr21:14481212-14481276 | GM10248 | blood: | n/a | n/a |
5 | CTCF | chr21:14463447-14463540 | Lung_OC | lung: | n/a | n/a |
6 | CTCF | chr21:14475759-14475809 | Medullo | brain: | n/a | n/a |
7 | CTCF | chr21:14475128-14475188 | Lung_OC | lung: | n/a | n/a |
8 | CTCF | chr21:14455389-14455424 | LNCaP | prostate: | n/a | n/a |
9 | CTCF | chr21:14478402-14478500 | GM10248 | blood: | n/a | n/a |
10 | CTCF | chr21:14491766-14491881 | Medullo | brain: | n/a | n/a |
11 | CTCF | chr21:14458059-14458092 | Medullo | brain: | n/a | n/a |
12 | CTCF | chr21:14479111-14479174 | Kidney_OC | kidney: | n/a | n/a |
13 | CTCF | chr21:14460606-14460694 | GM13976 | blood: | n/a | n/a |
14 | CTCF | chr21:14485344-14485367 | GM10248 | blood: | n/a | n/a |
15 | CTCF | chr21:14471670-14471707 | GM13977 | blood: | n/a | n/a |
16 | CTCF | chr21:14485838-14485873 | GM20000 | blood: | n/a | n/a |
17 | CTCF | chr21:14459041-14459077 | Lung_OC | lung: | n/a | n/a |
18 | CTCF | chr21:14455953-14456066 | GM13976 | blood: | n/a | n/a |
19 | CTCF | chr21:14472032-14472117 | Spleen_OC | spleen: | n/a | n/a |
20 | CTCF | chr21:14475112-14475160 | Medullo | brain: | n/a | n/a |
21 | CTCF | chr21:14491810-14491882 | LNCaP | prostate: | n/a | n/a |
22 | EBF1 | chr21:14473499-14473727 | GM12878 | blood: | n/a | n/a |
23 | EBF1 | chr21:14473487-14473755 | GM12878 | blood: | n/a | n/a |
24 | EP300 | chr21:14476679-14476831 | GM12878 | blood: | n/a | n/a |
25 | EP300 | chr21:14495024-14495330 | GM12878 | blood: | n/a | n/a |
26 | EP300 | chr21:14492340-14492732 | GM12878 | blood: | n/a | n/a |
27 | EP300 | chr21:14476583-14476835 | GM12878 | blood: | n/a | n/a |
28 | FOSL2 | chr21:14490445-14490758 | HepG2 | liver: | n/a | n/a |
29 | FOSL2 | chr21:14490448-14490887 | HepG2 | liver: | n/a | n/a |
30 | FOXA1 | chr21:14490380-14490942 | HepG2 | liver: | n/a | n/a |
31 | GABPA | chr21:14492379-14492582 | HepG2 | liver: | n/a | n/a |
32 | GABPA | chr21:14458356-14458506 | Hela-S3 | cervix: | n/a | n/a |
33 | IRF4 | chr21:14480845-14481175 | GM12878 | blood: | n/a | n/a |
34 | JUND | chr21:14490578-14490737 | HepG2 | liver: | n/a | n/a |
35 | JUND | chr21:14490484-14490845 | HepG2 | liver: | n/a | n/a |
36 | PAX5 | chr21:14478805-14479079 | GM12878 | blood: | n/a | n/a |
37 | PAX5 | chr21:14492411-14492589 | GM12878 | blood: | n/a | n/a |
38 | PAX5 | chr21:14478797-14479145 | GM12878 | blood: | n/a | n/a |
39 | PAX5 | chr21:14473500-14473736 | GM12878 | blood: | n/a | n/a |
40 | PAX5 | chr21:14478740-14479108 | GM12878 | blood: | n/a | n/a |
41 | PAX5 | chr21:14478799-14479122 | GM12878 | blood: | n/a | n/a |
42 | PAX5 | chr21:14494721-14495316 | GM12878 | blood: | n/a | n/a |
43 | PBX3 | chr21:14476644-14476807 | GM12878 | blood: | n/a | n/a |
44 | POU2F2 | chr21:14481008-14481396 | GM12878 | blood: | n/a | n/a |
45 | POU2F2 | chr21:14464089-14464209 | GM12878 | blood: | n/a | n/a |
46 | POU2F2 | chr21:14478853-14479143 | GM12878 | blood: | n/a | n/a |
47 | POU2F2 | chr21:14495004-14495362 | GM12878 | blood: | n/a | n/a |
48 | POU2F2 | chr21:14492329-14492771 | GM12878 | blood: | n/a | n/a |
49 | RXRA | chr21:14490539-14490910 | HepG2 | liver: | n/a | n/a |
50 | RXRA | chr21:14490409-14490822 | HepG2 | liver: | n/a | n/a |
No data |
No data |
(count:2 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-POTED-13 | chr21:14492565-14493128 | NONHSAT081097 |
2 | lnc-POTED-4 | chr21:14490159-14490571 | NR_026916 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ZNF355P | TF binding region |
ENSG00000237202 | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs577090876 | chr21:14490194-14490195 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs545769286 | chr21:14490241-14490242 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs559127657 | chr21:14490254-14490255 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs528189781 | chr21:14490372-14490373 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs541479882 | chr21:14490386-14490387 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
6 | rs561458226 | chr21:14490395-14490396 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
7 | rs572046012 | chr21:14490423-14490424 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
8 | rs530972508 | chr21:14490447-14490448 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
9 | rs147500365 | chr21:14490467-14490468 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
10 | rs571100349 | chr21:14490493-14490494 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
11 | rs533487679 | chr21:14490494-14490495 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
12 | rs546963004 | chr21:14490525-14490526 | Inactive region | TF binding regionlncRNA | 2 gene(s) | Overlapped CNVs | n/a |
13 | rs199933318 | chr21:14490699-14490700 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
14 | rs200740846 | chr21:14490702-14490703 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
15 | rs201930719 | chr21:14490733-14490734 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
16 | rs62213093 | chr21:14490788-14490789 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
17 | rs538383374 | chr21:14491767-14491768 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs550751466 | chr21:14491776-14491777 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs570508711 | chr21:14491784-14491785 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs539630863 | chr21:14491842-14491843 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs552960175 | chr21:14491879-14491880 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs549389998 | chr21:14492365-14492366 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs562918523 | chr21:14492405-14492406 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs531742202 | chr21:14492408-14492409 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs551545245 | chr21:14492412-14492413 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs200022930 | chr21:14492418-14492419 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs4618136 | chr21:14492425-14492426 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs77002763 | chr21:14492477-14492478 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs74970892 | chr21:14492478-14492479 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs571731832 | chr21:14492524-14492525 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs539231181 | chr21:14492529-14492530 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs546799391 | chr21:14492598-14492599 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs565828827 | chr21:14492614-14492615 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs201704248 | chr21:14492644-14492645 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs200282025 | chr21:14492660-14492661 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs201188897 | chr21:14492695-14492696 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
37 | rs201905951 | chr21:14492725-14492726 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
38 | rs200566878 | chr21:14492759-14492760 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
39 | rs554938181 | chr21:14492776-14492777 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
40 | rs553403805 | chr21:14492777-14492778 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
41 | rs73891562 | chr21:14492784-14492785 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
42 | rs199578541 | chr21:14492811-14492812 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
43 | rs574845827 | chr21:14492870-14492871 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
44 | rs374202436 | chr21:14492923-14492924 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
45 | rs200034717 | chr21:14492940-14492941 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
46 | rs4079730 | chr21:14492998-14492999 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
47 | rs537856022 | chr21:14493029-14493030 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
48 | rs200744800 | chr21:14493038-14493039 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
49 | rs201547537 | chr21:14493044-14493045 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
50 | rs4079729 | chr21:14493046-14493047 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ovarian cancer | 21720365 | CNVD |
Wilms tumour | 21544195 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 16751803 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Down syndrome | 17412756 | CNVD |
Down syndrome | 17576883 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Sudden cardiac death | 19188705 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Breast cancer | 21509527 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Seminomas | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Congenital abnormalities | 21549014 | CNVD |
Developmental delay | 21549014 | CNVD |
Mental retardation | 21549014 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Prostate cancer | 19156837 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Breast cancer | 20409316 | CNVD |
Autism | 18414403 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |