Variant report

Variant	esv18050
Chromosome Location	chr10:39076665-39154687
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:39150707..39151591-chr2:182675899..182676399,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-19	chr10:39114227-39114354	NONHSAT012845
2	lnc-ZNF37A-19	chr10:39122410-39122484	NONHSAT012845
3	lnc-ZNF37A-19	chr10:39121414-39121491	NONHSAT012845

Extended variants
information (count: 14047 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:14047 , 50 per page) page: 1 2 3 4 5 6 7 ... 281

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190679548	chr10:39076678-39076679	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
2	rs182880768	chr10:39076683-39076684	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
3	rs549669565	chr10:39076688-39076689	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
4	rs187732114	chr10:39076690-39076691	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
5	rs554885601	chr10:39076693-39076694	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
6	rs113304655	chr10:39076697-39076698	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
7	rs372745731	chr10:39076702-39076703	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
8	rs202214020	chr10:39076704-39076705	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
9	rs61837478	chr10:39076705-39076706	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
10	rs367772306	chr10:39076714-39076715	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
11	rs552437417	chr10:39076715-39076716	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
12	rs200254979	chr10:39076716-39076717	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
13	rs372117185	chr10:39076720-39076721	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
14	rs183373968	chr10:39076722-39076723	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
15	rs187311929	chr10:39076724-39076725	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
16	rs201732489	chr10:39076725-39076726	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
17	rs556542501	chr10:39076739-39076740	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
18	rs141269922	chr10:39076740-39076741	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs569662692	chr10:39076743-39076744	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs576489903	chr10:39076757-39076758	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs61837509	chr10:39076760-39076761	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
22	rs373503361	chr10:39076764-39076765	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
23	rs113819017	chr10:39076775-39076776	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
24	rs61837511	chr10:39076776-39076777	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
25	rs77210680	chr10:39076781-39076782	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
26	rs61837512	chr10:39076789-39076790	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
27	rs565314434	chr10:39076799-39076800	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
28	rs527920003	chr10:39076808-39076809	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
29	rs541350452	chr10:39076811-39076812	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
30	rs77401747	chr10:39076825-39076826	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
31	rs561671417	chr10:39076828-39076829	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
32	rs74644867	chr10:39076829-39076830	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
33	rs530328366	chr10:39076831-39076832	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
34	rs550156639	chr10:39076833-39076834	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
35	rs570078376	chr10:39076838-39076839	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
36	rs532622287	chr10:39076841-39076842	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
37	rs552734017	chr10:39076842-39076843	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
38	rs565723128	chr10:39076843-39076844	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
39	rs534861601	chr10:39076849-39076850	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
40	rs77818819	chr10:39076864-39076865	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
41	rs554567743	chr10:39076865-39076866	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
42	rs77970050	chr10:39076877-39076878	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
43	rs75105470	chr10:39076880-39076881	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
44	rs75048677	chr10:39076883-39076884	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
45	rs78857164	chr10:39076884-39076885	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs78063155	chr10:39076890-39076891	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs112520264	chr10:39076893-39076894	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs558167877	chr10:39076894-39076895	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs556505488	chr10:39076904-39076905	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
50	rs577937788	chr10:39076907-39076908	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:600 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39076400-39079800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
2	chr10:39076400-39155000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr10:39076600-39077200	Flanking Bivalent TSS/Enh	Gastric	stomach
4	chr10:39076600-39079600	ZNF genes & repeats	Pancreas	Pancrea
5	chr10:39076600-39079800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:39076600-39079800	ZNF genes & repeats	NH-A	brain
7	chr10:39076600-39082600	ZNF genes & repeats	K562	blood
8	chr10:39076600-39083000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:39076600-39083200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
10	chr10:39076600-39086400	ZNF genes & repeats	Spleen	Spleen
11	chr10:39076600-39088600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:39076600-39088600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:39076600-39088800	ZNF genes & repeats	Brain Angular Gyrus	brain
14	chr10:39076600-39089000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr10:39076600-39091000	ZNF genes & repeats	HUVEC	blood vessel
16	chr10:39076600-39094800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
17	chr10:39076600-39095000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:39076600-39095000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
19	chr10:39076600-39095000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
20	chr10:39076600-39095200	ZNF genes & repeats	Colon Smooth Muscle	Colon
21	chr10:39076600-39097200	ZNF genes & repeats	Fetal Heart	heart
22	chr10:39076600-39099000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
23	chr10:39076600-39100800	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr10:39076600-39101000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:39076600-39101400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:39076600-39101800	ZNF genes & repeats	Colonic Mucosa	Colon
27	chr10:39076600-39102200	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr10:39076600-39102400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr10:39076600-39116600	ZNF genes & repeats	Fetal Kidney	kidney
30	chr10:39076600-39121600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:39076600-39131800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr10:39076600-39154600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr10:39076600-39154800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
34	chr10:39076600-39154800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr10:39076600-39154800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr10:39076600-39154800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
37	chr10:39076600-39154800	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr10:39076600-39155000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
39	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:39076600-39155000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:39076600-39155000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
42	chr10:39076600-39155000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr10:39076600-39155000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr10:39076600-39155000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
45	chr10:39076600-39155000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:39076600-39155000	ZNF genes & repeats	Primary T cells from cord blood	blood
47	chr10:39076600-39155000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
48	chr10:39076600-39155000	ZNF genes & repeats	Liver	Liver
49	chr10:39076600-39155000	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr10:39076600-39155000	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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