Variant report
Variant | esv1805773 |
---|---|
Chromosome Location | chr8:1341206-1356989 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs574886419 | chr8:1356008-1356009 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs112265504 | chr8:1356009-1356010 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs7819095 | chr8:1356011-1356012 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs557335884 | chr8:1356014-1356015 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs565257625 | chr8:1356015-1356016 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs111433894 | chr8:1356037-1356038 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs183710991 | chr8:1356054-1356055 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs188770019 | chr8:1356055-1356056 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs35591395 | chr8:1356056-1356057 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
10 | rs140454984 | chr8:1356061-1356062 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs561826480 | chr8:1356071-1356072 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs144417525 | chr8:1356076-1356077 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs181129453 | chr8:1356085-1356086 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs186120348 | chr8:1356086-1356087 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs541152503 | chr8:1356099-1356100 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs191627337 | chr8:1356109-1356110 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs10088569 | chr8:1356113-1356114 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs34385223 | chr8:1356115-1356116 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs566074844 | chr8:1356127-1356128 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs548510448 | chr8:1356137-1356138 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs181704880 | chr8:1356144-1356145 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs151207004 | chr8:1356153-1356154 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs34659395 | chr8:1356169-1356170 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs187642960 | chr8:1356176-1356177 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs568576339 | chr8:1356220-1356221 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs537227413 | chr8:1356253-1356254 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs557501704 | chr8:1356276-1356277 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs191911056 | chr8:1356285-1356286 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs140989767 | chr8:1356286-1356287 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs111861608 | chr8:1356295-1356296 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs553253982 | chr8:1356302-1356303 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs182286320 | chr8:1356310-1356311 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs572500861 | chr8:1356325-1356326 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs740237 | chr8:1356333-1356334 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs112822712 | chr8:1356386-1356387 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs140528562 | chr8:1356387-1356388 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs186557563 | chr8:1356411-1356412 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
38 | rs740238 | chr8:1356420-1356421 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs190146699 | chr8:1356421-1356422 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs534754030 | chr8:1356422-1356423 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs740239 | chr8:1356444-1356445 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
42 | rs145872494 | chr8:1356453-1356454 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs535792290 | chr8:1356466-1356467 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs757891 | chr8:1356486-1356487 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs528461418 | chr8:1356489-1356490 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs565133001 | chr8:1356506-1356507 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs7823071 | chr8:1356510-1356511 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
48 | rs79044930 | chr8:1356538-1356539 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs77570653 | chr8:1356566-1356567 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs143339741 | chr8:1356571-1356572 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ovarian cancer | 21720365 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Congenital diaphragmatic hernia | 21341218 | CNVD |
Cancer | 18840272 | CNVD |
Pilocytic astrocytoma | 18622384 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Prostate cancer | 16573809 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
abnormal development | 18461090 | CNVD |
Crohn''s disease | 19220326 | CNVD |
Psoriasis | 19220326 | CNVD |
Prostate cancer | 21965145 | CNVD |
Prostate cancer | 18515986 | CNVD |
Chronic obstructive pulmonary disease | 20378733 | CNVD |
Autism | 18414403 | CNVD |
Cancer | 21183584 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Breast cancer | 17603634 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Cervical cancer | 17311676 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Schizophrenia | 20877625 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Breast cancer | 17001317 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Heart disease | 21282601 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Colorectal cancer | 21297112 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Breast cancer | 17133270 | CNVD |
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Breast cancer | 17393978 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Breast cancer | 20837533 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 22429812 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Breast cancer | 21264507 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Oral cancer | 21386901 | CNVD |
Prostate cancer | 21088497 | CNVD |
Breast cancer | 20940404 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Embryonal rhabdomyosarcoma | 16790082 | CNVD |
Gastric cancer | 17167181 | CNVD |
Prostate cancer | 16705090 | CNVD |
8p-syndrome | 17576883 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Lung adenocarcinoma | 19525976 | CNVD |
Lung cancer | 19525976 | CNVD |
Prostate cancer | 17245344 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Cancer | 16751803 | CNVD |
Wilms tumour | 21544195 | CNVD |
Gastric cancer | 17908304 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 21785460 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Lung cancer | 18438408 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 21509527 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Epilepsy | 22083797 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Breast cancer | 21364760 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21858162 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Autism | 22495311 | CNVD |
Autism | 20531469 | CNVD |
Breast cancer | 20932292 | CNVD |
Congenital diaphragmatic hernia | 21064195 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:1356000-1356800 | ZNF genes & repeats | Esophagus | oesophagus |
2 | chr8:1356600-1357200 | Enhancers | Brain Germinal Matrix | brain |