Variant report

Variant	esv1805882
Chromosome Location	chr7:100636011-100647580
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACHE-6	chr7:100643354-100643800	NONHSAT122434
2	lnc-ACHE-6	chr7:100647545-100647615	NONHSAT122434

Extended variants
information (count: 519 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:519 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567790451	chr7:100636042-100636043	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs372227524	chr7:100636112-100636113	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs34196598	chr7:100636147-100636148	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs374531861	chr7:100636153-100636154	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369160385	chr7:100636154-100636155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539750010	chr7:100636155-100636156	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs557993713	chr7:100636160-100636161	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201532225	chr7:100636169-100636170	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377757131	chr7:100636174-100636175	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369535340	chr7:100636175-100636176	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35874995	chr7:100636207-100636208	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs200830580	chr7:100636232-100636233	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573433473	chr7:100636264-100636265	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs377737749	chr7:100636265-100636266	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562191016	chr7:100636271-100636272	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201651567	chr7:100636278-100636279	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201530219	chr7:100636285-100636286	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376358908	chr7:100636286-100636287	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs369484988	chr7:100636291-100636292	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527958065	chr7:100636294-100636295	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549589095	chr7:100636319-100636320	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs199830571	chr7:100636327-100636328	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113603787	chr7:100636331-100636332	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531888174	chr7:100636356-100636357	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550254935	chr7:100636360-100636361	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs571680234	chr7:100636361-100636362	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs537437002	chr7:100636369-100636370	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs538991481	chr7:100636382-100636383	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs200317318	chr7:100636383-100636384	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs557791110	chr7:100636384-100636385	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs142190605	chr7:100636408-100636409	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs566785615	chr7:100636446-100636447	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs533828274	chr7:100636447-100636448	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555574897	chr7:100636451-100636452	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113111921	chr7:100636461-100636462	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200679725	chr7:100636467-100636468	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555799330	chr7:100636474-100636475	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201339477	chr7:100636485-100636486	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200776977	chr7:100636550-100636551	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199616217	chr7:100636573-100636574	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150131157	chr7:100636584-100636585	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs528030860	chr7:100636592-100636593	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs542949107	chr7:100636595-100636596	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192144740	chr7:100636602-100636603	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs184584311	chr7:100636628-100636629	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs550315928	chr7:100636630-100636631	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs571743181	chr7:100636635-100636636	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532480722	chr7:100636642-100636643	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs547801918	chr7:100636652-100636653	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs565925061	chr7:100636666-100636667	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100633200-100637800	Strong transcription	Rectal Mucosa Donor 31	rectum
2	chr7:100633400-100636400	Strong transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:100635400-100660000	Weak transcription	Gastric	stomach
4	chr7:100635600-100648200	Weak transcription	Colonic Mucosa	Colon
5	chr7:100635800-100636400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr7:100635800-100660000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:100635800-100660200	Weak transcription	Right Atrium	heart
8	chr7:100636400-100642600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:100636400-100647800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:100637800-100641800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:100641800-100644000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr7:100642400-100643000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:100642600-100643600	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr7:100642800-100643400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:100643200-100643600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:100643200-100643600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:100643200-100643600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:100643400-100643600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:100643400-100643800	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr7:100643600-100647800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:100643800-100655400	Weak transcription	Fetal Intestine Small	intestine
22	chr7:100644000-100647800	Weak transcription	Rectal Mucosa Donor 31	rectum

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