Variant report
Variant | esv1805978 |
---|---|
Chromosome Location | chr9:17910066-17922697 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs537266216 | chr9:17920216-17920217 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs183029766 | chr9:17920234-17920235 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs571066752 | chr9:17920240-17920241 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs535323786 | chr9:17920272-17920273 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs553048567 | chr9:17920274-17920275 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs574461021 | chr9:17920318-17920319 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs535578507 | chr9:17920319-17920320 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs187712051 | chr9:17920351-17920352 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs575270816 | chr9:17920353-17920354 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs548773154 | chr9:17920368-17920369 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs545681937 | chr9:17920437-17920438 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs564267278 | chr9:17920455-17920456 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs192628491 | chr9:17920466-17920467 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs572842856 | chr9:17920498-17920499 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs540133674 | chr9:17920510-17920511 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs559350147 | chr9:17920571-17920572 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs530024404 | chr9:17920572-17920573 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs548146596 | chr9:17920575-17920576 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs13301593 | chr9:17920596-17920597 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
20 | rs113516425 | chr9:17920634-17920635 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs10810874 | chr9:17920659-17920660 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs7848357 | chr9:17920746-17920747 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs184784792 | chr9:17920756-17920757 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs547295814 | chr9:17920770-17920771 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs568736255 | chr9:17920774-17920775 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs535464539 | chr9:17920788-17920789 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs188023316 | chr9:17920796-17920797 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs372012688 | chr9:17920840-17920841 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs559537656 | chr9:17920841-17920842 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs575252253 | chr9:17920861-17920862 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs539512121 | chr9:17920889-17920890 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs557715198 | chr9:17920898-17920899 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs10963340 | chr9:17920899-17920900 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs143644002 | chr9:17920973-17920974 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs555259900 | chr9:17920981-17920982 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs146819368 | chr9:17920984-17920985 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs541862927 | chr9:17920990-17920991 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs563689628 | chr9:17921007-17921008 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs368728365 | chr9:17921016-17921017 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs192350848 | chr9:17921043-17921044 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs564556644 | chr9:17921044-17921045 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs528712109 | chr9:17921080-17921081 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs369141827 | chr9:17921098-17921099 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs112133958 | chr9:17921125-17921126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs547187369 | chr9:17921127-17921128 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs184688172 | chr9:17921130-17921131 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs529570569 | chr9:17921146-17921147 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs550346937 | chr9:17921169-17921170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs139506271 | chr9:17921212-17921213 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs539187232 | chr9:17921216-17921217 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
abnormal development | 18461090 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Breast cancer | 16608533 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 16272173 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Cervical cancer | 21063398 | CNVD |
Retinoblastoma | 22278416 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Melanoma | 18172304 | CNVD |
Biliary cancer | 19435499 | CNVD |
Gastric cancer | 21586687 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Myopathy | 18421352 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Acute lymphoblastic leukemia | 18957548 | CNVD |
Myeloproliferative neoplasm | 17564968 | CNVD |
Malignant meningioma | 17937814 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cutaneous squamous cell carcinomas | 19131950 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Chordoma | 18071362 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Developmental delay | 19490664 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
microdeletion syndrome | 16199537 | CNVD |
Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
Cancer | 20164919 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Lung cancer | 18438408 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Oral cancer | 21386901 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Breast cancer | 21785460 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Autism | 22495311 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Developmental delay | 21147756 | CNVD |
Pilocytic astrocytoma | 18670637 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Melanoma | 22183965 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glycine encephalopathy | 21572526 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Breast cancer | 21364760 | CNVD |
Cancer | 22183965 | CNVD |
Ovarian cancer | 19835627 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:17920200-17921000 | Enhancers | Aorta | Aorta |
2 | chr9:17920600-17920800 | Enhancers | Fetal Kidney | kidney |
3 | chr9:17920800-17921000 | Enhancers | Fetal Muscle Leg | muscle |
4 | chr9:17921000-17922200 | Weak transcription | Aorta | Aorta |
5 | chr9:17921000-17922200 | Weak transcription | Fetal Muscle Leg | muscle |
6 | chr9:17921000-17922600 | Weak transcription | Fetal Kidney | kidney |
7 | chr9:17922200-17922400 | Enhancers | Aorta | Aorta |
8 | chr9:17922200-17923000 | Enhancers | Fetal Muscle Leg | muscle |
9 | chr9:17922400-17922800 | Weak transcription | Aorta | Aorta |
10 | chr9:17922600-17923000 | Enhancers | Fetal Kidney | kidney |