Variant report

Variant	esv1806555
Chromosome Location	chr10:26608205-26612270
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26608523..26610420-chr10:26610940..26613884,2	MCF-7	breast:
2	chr10:26608523..26610420-chr10:26610940..26613884,2	MCF-7	breast:

Extended variants
information (count: 190 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:190 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573127781	chr10:26608225-26608226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs183359463	chr10:26608226-26608227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs564563429	chr10:26608232-26608233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs376994556	chr10:26608233-26608234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs200885532	chr10:26608249-26608250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs574862167	chr10:26608269-26608270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187700840	chr10:26608295-26608296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs560693641	chr10:26608298-26608299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs192547746	chr10:26608325-26608326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs529728808	chr10:26608375-26608376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs56850688	chr10:26608376-26608377	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs559667329	chr10:26608395-26608396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs528801745	chr10:26608399-26608400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs551752533	chr10:26608429-26608430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs185142586	chr10:26608482-26608483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs56271228	chr10:26608489-26608490	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs190072031	chr10:26608501-26608502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs138638291	chr10:26608561-26608562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs143299098	chr10:26608572-26608573	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs372359764	chr10:26608575-26608576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs61397455	chr10:26608579-26608580	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs142944871	chr10:26608621-26608622	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs192866947	chr10:26608623-26608624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs139297739	chr10:26608629-26608630	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs60620484	chr10:26608630-26608631	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs397940003	chr10:26608634-26608635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs535256909	chr10:26608635-26608636	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs558392293	chr10:26608677-26608678	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184905090	chr10:26608691-26608692	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112440538	chr10:26608707-26608708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs560529222	chr10:26608730-26608731	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs146119234	chr10:26608767-26608768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs368730015	chr10:26608772-26608773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs188108016	chr10:26608804-26608805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs147429077	chr10:26608830-26608831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs559912169	chr10:26608836-26608837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs534509373	chr10:26608895-26608896	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528636927	chr10:26608899-26608900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs139152630	chr10:26608927-26608928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs577737238	chr10:26608933-26608934	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs112353918	chr10:26608940-26608941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs149918872	chr10:26608974-26608975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs144297655	chr10:26608978-26608979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs554128383	chr10:26608982-26608983	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs74507666	chr10:26608996-26608997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs546745044	chr10:26609062-26609063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566670057	chr10:26609066-26609067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538411538	chr10:26609068-26609069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148734580	chr10:26609101-26609102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs34526122	chr10:26609111-26609112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26608200-26609000	Enhancers	Pancreas	Pancrea
2	chr10:26609000-26610600	Weak transcription	Pancreas	Pancrea
3	chr10:26610600-26610800	Enhancers	Pancreas	Pancrea
4	chr10:26610800-26612600	Weak transcription	Pancreas	Pancrea
5	chr10:26612000-26621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links