Variant report
Variant | esv1806711 |
---|---|
Chromosome Location | chr14:44618955-44621631 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-FSCB-6 | chr14:44621313-44621629 | l_977_chr14:44621312-44622966_testes |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs372836471 | chr14:44618965-44618966 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs568855234 | chr14:44618972-44618973 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs529746327 | chr14:44618982-44618983 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs568297660 | chr14:44620219-44620220 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs183965276 | chr14:44620222-44620223 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs72682637 | chr14:44620246-44620247 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs149840261 | chr14:44620262-44620263 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs75164378 | chr14:44620287-44620288 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs533987612 | chr14:44620335-44620336 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs558639176 | chr14:44620349-44620350 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs570685405 | chr14:44620369-44620370 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs145866431 | chr14:44620377-44620378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs370676070 | chr14:44620415-44620416 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs574425982 | chr14:44620418-44620419 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs575073660 | chr14:44620489-44620490 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs541806610 | chr14:44620490-44620491 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs567482568 | chr14:44620537-44620538 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs188910866 | chr14:44620550-44620551 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs34850579 | chr14:44620592-44620593 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs553756287 | chr14:44620609-44620610 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs148551931 | chr14:44620622-44620623 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs193090659 | chr14:44620638-44620639 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs7157808 | chr14:44620692-44620693 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs556499904 | chr14:44620702-44620703 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs531517113 | chr14:44620709-44620710 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs74048419 | chr14:44620711-44620712 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs562011772 | chr14:44620716-44620717 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs570025957 | chr14:44620739-44620740 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs529126683 | chr14:44620742-44620743 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs547675990 | chr14:44620746-44620747 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs566493866 | chr14:44620766-44620767 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs539074588 | chr14:44620800-44620801 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs545668371 | chr14:44620821-44620822 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs527699899 | chr14:44620824-44620825 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs112886246 | chr14:44620907-44620908 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs368959211 | chr14:44620980-44620981 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs113426577 | chr14:44620998-44620999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs538427470 | chr14:44621005-44621006 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs556529127 | chr14:44621085-44621086 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs568643159 | chr14:44621090-44621091 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs535734428 | chr14:44621093-44621094 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs1610295 | chr14:44621097-44621098 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs572044828 | chr14:44621108-44621109 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs17309358 | chr14:44621145-44621146 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
45 | rs541970223 | chr14:44621150-44621151 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs184490149 | chr14:44621187-44621188 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs187366395 | chr14:44621262-44621263 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs543504331 | chr14:44621278-44621279 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs113811247 | chr14:44621291-44621292 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs17278928 | chr14:44621316-44621317 | Weak transcription | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 17899364 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Wilms tumour | 21544195 | CNVD |
Lung cancer | 18438408 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Breast cancer | 21785460 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Prostate cancer | 18632612 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Breast cancer | 21858162 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Cancer | 21183584 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 21364760 | CNVD |
Melanoma | 17363583 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:44618800-44619000 | Enhancers | Pancreas | Pancrea |
2 | chr14:44620200-44623600 | Weak transcription | Pancreas | Pancrea |