Variant report

Variant	esv1807747
Chromosome Location	chr7:149897641-149922199
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:149904533..149906054-chr7:153459094..153460640,2	K562	blood:
2	chr7:149757556..149758057-chr7:149919306..149919858,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRC61-6	chr7:149920552-149920586	NONHSAT124097
2	lnc-LRRC61-6	chr7:149920801-149921193	NONHSAT124097
3	lnc-ACTR3C-2	chr7:149903393-149903435	XLOC_006644
4	lnc-ACTR3C-2	chr7:149917334-149917567	XLOC_006644
5	lnc-ACTR3C-2	chr7:149918021-149918381	XLOC_006644
6	lnc-ACTR3C-2	chr7:149917353-149917587	XLOC_006644

No data

Variant related genes	Relation type
ZEB2	miRNA target sites

Extended variants
information (count: 705 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:705 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2533406	chr7:149897641-149897642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542681693	chr7:149897651-149897652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs2533405	chr7:149897695-149897696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs559965561	chr7:149897742-149897743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528126080	chr7:149897795-149897796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs546256621	chr7:149897800-149897801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs191083072	chr7:149897809-149897810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs531055666	chr7:149897821-149897822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs550635738	chr7:149897827-149897828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562090457	chr7:149897861-149897862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529535074	chr7:149897893-149897894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201603464	chr7:149897938-149897939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs199575971	chr7:149897958-149897959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546295276	chr7:149897985-149897986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs566734304	chr7:149898016-149898017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538939417	chr7:149898024-149898025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs60093067	chr7:149898041-149898042	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs569066028	chr7:149898104-149898105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538069799	chr7:149898126-149898127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs557403161	chr7:149898156-149898157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs112467398	chr7:149898182-149898183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567674931	chr7:149898203-149898204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536612243	chr7:149898271-149898272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553101131	chr7:149898274-149898275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376971057	chr7:149898308-149898309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201177306	chr7:149898334-149898335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111545434	chr7:149898347-149898348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs149869299	chr7:149898377-149898378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558862431	chr7:149898404-149898405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113848800	chr7:149898410-149898411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182845115	chr7:149898432-149898433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111673627	chr7:149898494-149898495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113950797	chr7:149898501-149898502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551817709	chr7:149898503-149898504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113352966	chr7:149898521-149898522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs73170162	chr7:149898544-149898545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs544500819	chr7:149898604-149898605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561006198	chr7:149898631-149898632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs567439056	chr7:149898682-149898683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547459561	chr7:149898683-149898684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs55841387	chr7:149898696-149898697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs377144268	chr7:149898724-149898725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540181142	chr7:149898752-149898753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs560188755	chr7:149898796-149898797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114133301	chr7:149898825-149898826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552486230	chr7:149898835-149898836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201841254	chr7:149898836-149898837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs79358407	chr7:149898841-149898842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs569200706	chr7:149898850-149898851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534223976	chr7:149898887-149898888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149893600-149903000	Weak transcription	Right Atrium	heart
2	chr7:149900000-149900200	Enhancers	Gastric	stomach
3	chr7:149900200-149917200	Weak transcription	Gastric	stomach
4	chr7:149901800-149902000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:149902600-149904600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr7:149902600-149905400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:149903200-149904400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr7:149916800-149917000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:149916800-149917200	Active TSS	Brain Germinal Matrix	brain
10	chr7:149917000-149917200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:149917000-149917200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:149917000-149917200	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:149917000-149917200	Active TSS	Brain Angular Gyrus	brain
14	chr7:149917000-149917200	Active TSS	Brain Hippocampus Middle	brain
15	chr7:149917000-149917200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr7:149917000-149917400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:149917000-149917400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:149917000-149917600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr7:149917000-149917800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:149917000-149917800	Active TSS	Stomach Smooth Muscle	stomach
21	chr7:149917000-149917800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr7:149917000-149918000	Active TSS	Brain Anterior Caudate	brain
23	chr7:149917000-149918200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr7:149917000-149918200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr7:149917000-149918200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
26	chr7:149917000-149918200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr7:149917000-149918200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
30	chr7:149917000-149918200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr7:149917000-149918200	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr7:149917000-149918200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
33	chr7:149917000-149918400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr7:149917000-149918400	Enhancers	Liver	Liver
35	chr7:149917000-149918400	Bivalent/Poised TSS	Fetal Brain Female	brain
36	chr7:149917000-149918400	Enhancers	Lung	lung
37	chr7:149917000-149918400	Enhancers	Pancreas	Pancrea
38	chr7:149917200-149917400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:149917200-149917400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:149917200-149917400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:149917200-149917400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr7:149917200-149917400	Bivalent Enhancer	Fetal Brain Male	brain
45	chr7:149917200-149917800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr7:149917200-149918000	Active TSS	Primary hematopoietic stem cells	blood
47	chr7:149917200-149918000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:149917200-149918000	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr7:149917200-149918000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr7:149917200-149918200	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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