Variant report

Variant	esv1809041
Chromosome Location	chr6:32395420-32485966
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1060)
CpG islands
(count:2748)
Chromatin interactive
region (count:31)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1060 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:32395696-32395737	K562	blood:	n/a	n/a
2	ARID3A	chr6:32399838-32400104	HepG2	liver:	n/a	n/a
3	ATF1	chr6:32441356-32441603	K562	blood:	n/a	n/a
4	ATF1	chr6:32405255-32405576	K562	blood:	n/a	n/a
5	ATF1	chr6:32443384-32443601	K562	blood:	n/a	n/a
6	ATF1	chr6:32407132-32407744	K562	blood:	n/a	n/a
7	ATF2	chr6:32407052-32408123	GM12878	blood:	n/a	n/a
8	ATF2	chr6:32407003-32408585	GM12878	blood:	n/a	n/a
9	ATF2	chr6:32412368-32413987	GM12878	blood:	n/a	n/a
10	ATF2	chr6:32412423-32414060	GM12878	blood:	n/a	n/a
11	ATF2	chr6:32404796-32405809	GM12878	blood:	n/a	n/a
12	ATF2	chr6:32409095-32409641	GM12878	blood:	n/a	n/a
13	ATF2	chr6:32430245-32430782	GM12878	blood:	n/a	n/a
14	ATF2	chr6:32409068-32411152	GM12878	blood:	n/a	n/a
15	ATF2	chr6:32404939-32405775	GM12878	blood:	n/a	n/a
16	ATF2	chr6:32409731-32411271	GM12878	blood:	n/a	n/a
17	ATF2	chr6:32430276-32430774	GM12878	blood:	n/a	n/a
18	BACH1	chr6:32440601-32440675	K562	blood:	n/a	n/a
19	BATF	chr6:32399992-32400251	GM12878	blood:	n/a	n/a
20	BATF	chr6:32430260-32430743	GM12878	blood:	n/a	n/a
21	BATF	chr6:32441263-32441838	GM12878	blood:	n/a	n/a
22	BATF	chr6:32426043-32426267	GM12878	blood:	n/a	n/a
23	BATF	chr6:32405118-32405490	GM12878	blood:	n/a	chr6:32405345-32405354
24	BATF	chr6:32415764-32416086	GM12878	blood:	n/a	n/a
25	BATF	chr6:32430225-32430811	GM12878	blood:	n/a	n/a
26	BATF	chr6:32405118-32405463	GM12878	blood:	n/a	chr6:32405345-32405354
27	BCL11A	chr6:32430360-32430746	GM12878	blood:	n/a	chr6:32430439-32430448 chr6:32430485-32430494
28	BCL11A	chr6:32413771-32414375	GM12878	blood:	n/a	n/a
29	BCL11A	chr6:32412812-32413762	GM12878	blood:	n/a	n/a
30	BCL3	chr6:32412914-32413720	GM12878	blood:	n/a	n/a
31	BCL3	chr6:32412831-32413993	GM12878	blood:	n/a	n/a
32	BCL3	chr6:32430394-32430814	GM12878	blood:	n/a	chr6:32430439-32430448 chr6:32430485-32430494
33	BCLAF1	chr6:32406865-32408029	GM12878	blood:	n/a	n/a
34	BCLAF1	chr6:32440393-32441925	GM12878	blood:	n/a	n/a
35	BCLAF1	chr6:32405064-32405583	GM12878	blood:	n/a	chr6:32405338-32405347
36	BCLAF1	chr6:32408164-32408928	GM12878	blood:	n/a	chr6:32408432-32408441
37	BCLAF1	chr6:32440374-32441401	GM12878	blood:	n/a	n/a
38	BCLAF1	chr6:32409003-32414169	GM12878	blood:	n/a	chr6:32409864-32409873
39	BCLAF1	chr6:32408102-32408947	GM12878	blood:	n/a	chr6:32408432-32408441
40	BCLAF1	chr6:32406824-32408091	GM12878	blood:	n/a	n/a
41	BCLAF1	chr6:32404734-32405702	GM12878	blood:	n/a	chr6:32405338-32405347
42	BCLAF1	chr6:32409032-32411302	GM12878	blood:	n/a	chr6:32409864-32409873
43	BCLAF1	chr6:32411435-32413723	GM12878	blood:	n/a	n/a
44	BCLAF1	chr6:32430238-32430769	GM12878	blood:	n/a	chr6:32430439-32430448 chr6:32430485-32430494
45	BHLHE40	chr6:32401402-32401424	GM12878	blood:	n/a	n/a
46	BHLHE40	chr6:32411016-32411100	GM12878	blood:	n/a	n/a
47	BHLHE40	chr6:32428465-32428474	GM12878	blood:	n/a	n/a
48	BHLHE40	chr6:32430364-32430844	GM12878	blood:	n/a	n/a
49	BHLHE40	chr6:32441347-32441706	GM12878	blood:	n/a	n/a
50	BHLHE40	chr6:32407197-32407979	GM12878	blood:	n/a	n/a

(count:2748 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:32405733-32405783	BE2_C	brain:	n/a
2	chr6:32408863-32408913	H1-hESC	embryonic stem cell:	embryo
3	chr6:32397683-32397733	T-47D	breast:	n/a
4	chr6:32405733-32405783	BE2_C	brain:	n/a
5	chr6:32408863-32408913	H1-hESC	embryonic stem cell:	embryo
6	chr6:32397683-32397733	T-47D	breast:	n/a
7	chr6:32411897-32411947	CMK	blood:	n/a
8	chr6:32466447-32466497	HMEC	breast:	n/a
9	chr6:32408596-32408646	GM12892	blood:	n/a
10	chr6:32405733-32405783	AoSMC	blood vessel:	n/a
11	chr6:32407515-32407565	CMK	blood:	n/a
12	chr6:32410443-32410493	ECC-1	luminal epithelium:	n/a
13	chr6:32411075-32411125	PrEC	prostate:	n/a
14	chr6:32449961-32450011	PrEC	prostate:	n/a
15	chr6:32397683-32397733	MCF-7	breast:	n/a
16	chr6:32411185-32411235	HAEpiC	amniotic membrane:	n/a
17	chr6:32408284-32408334	SKMC	muscle:	n/a
18	chr6:32410365-32410415	BE2_C	brain:	n/a
19	chr6:32449961-32450011	A549	lung:	n/a
20	chr6:32452388-32452438	HCT-116	colon:	n/a
21	chr6:32407289-32407339	NHDF-neo	bronchial:	n/a
22	chr6:32407570-32407620	SK-N-SH	brain:	n/a
23	chr6:32411897-32411947	GM12891	blood:	n/a
24	chr6:32397683-32397733	Caco-2	colon:	n/a
25	chr6:32410339-32410389	GM12891	blood:	n/a
26	chr6:32415210-32415260	ProgFib	skin:	n/a
27	chr6:32485396-32485446	ovcar-3	ovarian:	n/a
28	chr6:32397683-32397733	A549	lung:	n/a
29	chr6:32411185-32411235	GM12892	blood:	n/a
30	chr6:32427868-32427918	ovcar-3	ovarian:	n/a
31	chr6:32397683-32397733	NHDF-neo	bronchial:	n/a
32	chr6:32410459-32410509	HEEpiC	esophagus:	n/a
33	chr6:32427898-32427948	BE2_C	brain:	n/a
34	chr6:32452388-32452438	Caco-2	colon:	n/a
35	chr6:32409856-32409906	PFSK-1	brain:	n/a
36	chr6:32411185-32411235	RPTEC	kidney:	n/a
37	chr6:32405733-32405783	H1-hESC	embryonic stem cell:	embryo
38	chr6:32411185-32411235	U87	brain:	n/a
39	chr6:32415210-32415260	Jurkat	blood:	n/a
40	chr6:32410339-32410389	HepG2	liver:	n/a
41	chr6:32410339-32410389	U87	brain:	n/a
42	chr6:32409413-32409463	HIPEpiC	eye:	n/a
43	chr6:32451079-32451129	MCF-7	breast:	n/a
44	chr6:32408863-32408913	NB4	blood:	n/a
45	chr6:32409386-32409436	MCF10A-Er-Src	breast:	n/a
46	chr6:32407289-32407339	LNCaP	prostate:	n/a
47	chr6:32410459-32410509	HPAEpiC	pulmonary alveolar:	n/a
48	chr6:32407689-32407739	AG04449	skin:	fetal
49	chr6:32405733-32405783	Hela-S3	cervix:	n/a
50	chr6:32451079-32451129	HIPEpiC	eye:	n/a

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32428050..32428565-chr6:32526154..32527013,2	MCF-7	breast:
2	chr6:32409031..32411738-chr6:32430309..32432533,2	MCF-7	breast:
3	chr6:32409031..32411738-chr6:32430309..32432533,2	MCF-7	breast:
4	chr6:32428191..32430542-chr6:32458841..32460810,2	MCF-7	breast:
5	chr6:32432882..32434661-chr6:32437882..32440556,2	K562	blood:
6	chr6:32412592..32414941-chr6:32416711..32418347,2	MCF-7	breast:
7	chr6:32399474..32400480-chr6:32667988..32668525,4	K562	blood:
8	chr6:32432882..32434661-chr6:32437882..32440556,2	K562	blood:
9	chr6:32412592..32414941-chr6:32416711..32418347,2	MCF-7	breast:
10	chr6:32428191..32430542-chr6:32458841..32460810,2	MCF-7	breast:
11	chr6:32400692..32402423-chr6:32402840..32404507,2	K562	blood:
12	chr6:32399459..32400332-chr6:32443390..32444188,2	MCF-7	breast:
13	chr6:32428020..32430346-chr6:32430638..32433347,2	K562	blood:
14	chr6:32404273..32406915-chr6:32408900..32411021,2	MCF-7	breast:
15	chr6:32400824..32401535-chr6:32443504..32444248,2	MCF-7	breast:
16	chr6:32400824..32401535-chr6:32443504..32444248,2	MCF-7	breast:
17	chr6:32409002..32411494-chr6:32412118..32413877,2	K562	blood:
18	chr6:32400692..32402423-chr6:32402840..32404507,2	K562	blood:
19	chr6:32086283..32087229-chr6:32443372..32443883,2	K562	blood:
20	chr6:32478863..32481240-chr6:32540968..32542884,2	K562	blood:
21	chr6:32404273..32406915-chr6:32408900..32411021,2	MCF-7	breast:
22	chr6:32383034..32383683-chr6:32443303..32444621,3	MCF-7	breast:
23	chr6:32399459..32400332-chr6:32443390..32444188,2	MCF-7	breast:
24	chr6:32399827..32400596-chr6:32668021..32668936,2	MCF-7	breast:
25	chr6:32483984..32486232-chr6:32528948..32530708,2	MCF-7	breast:
26	chr6:32446571..32447329-chr6:32534338..32534901,2	MCF-7	breast:
27	chr6:32382946..32383924-chr6:32399513..32400411,3	MCF-7	breast:
28	chr6:32392086..32394927-chr6:32401515..32403109,2	MCF-7	breast:
29	chr6:32428020..32430346-chr6:32430638..32433347,2	K562	blood:
30	chr6:32409002..32411494-chr6:32412118..32413877,2	K562	blood:
31	chr6:32399520..32400227-chr6:32764523..32765024,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HLA-DRA-5	chr6:32475256-32475512	NONHSAT108909
2	lnc-HLA-DRB5-1	chr6:32427598-32427864	NONHSAT108907
3	lnc-HLA-DRA-4	chr6:32474307-32474692	NONHSAT108908
4	lnc-HLA-DRA-2	chr6:32425817-32426300	NONHSAT108906
5	lnc-HLA-DRB5-1	chr6:32441202-32441277	NONHSAT108907

No data

Variant related genes	Relation type
HLA-DRA	TF binding region
HLA-DRB9	TF binding region
HLA-DRA	CpG island
HLA-DRB9	CpG island

Extended variants
information (count: 4009 )
Associated
traits (count: 131 )

Variant overlapped rSNPs/rCNVs (count:4009 , 50 per page) page: 1 2 3 4 5 6 7 ... 81

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115661515	chr6:32395428-32395429	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs182194701	chr6:32395457-32395458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs1894552	chr6:32395465-32395466	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs143703886	chr6:32395481-32395482	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551625859	chr6:32395498-32395499	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs73404904	chr6:32395507-32395508	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs75658393	chr6:32395517-32395518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs147249670	chr6:32395544-32395545	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs140699293	chr6:32395550-32395551	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs2187818	chr6:32395568-32395569	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs370298605	chr6:32395575-32395576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs9501623	chr6:32395597-32395598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs116130080	chr6:32395614-32395615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs114657744	chr6:32395626-32395627	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs9268576	chr6:32395641-32395642	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs2105903	chr6:32395656-32395657	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs570596689	chr6:32395665-32395666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs199666811	chr6:32395694-32395695	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs2105902	chr6:32395698-32395699	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs3129843	chr6:32395726-32395727	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs555155123	chr6:32395764-32395765	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs3129844	chr6:32395835-32395836	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs538150811	chr6:32395885-32395886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs116705089	chr6:32395914-32395915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555910766	chr6:32395917-32395918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs114590154	chr6:32395924-32395925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs545009681	chr6:32395930-32395931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9268577	chr6:32395942-32395943	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs527531285	chr6:32395947-32395948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs58103245	chr6:32395956-32395957	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs144750311	chr6:32395957-32395958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs9268578	chr6:32396057-32396058	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs550219852	chr6:32396066-32396067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs77055720	chr6:32396078-32396079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75487304	chr6:32396079-32396080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547814812	chr6:32396104-32396105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542716857	chr6:32396108-32396109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549575993	chr6:32396109-32396110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369652666	chr6:32396114-32396115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199874348	chr6:32396115-32396116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs566371076	chr6:32396123-32396124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs78566116	chr6:32396146-32396147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560187154	chr6:32396216-32396217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10223846	chr6:32396230-32396231	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs6912072	chr6:32396265-32396266	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs3129845	chr6:32396277-32396278	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs6911791	chr6:32396288-32396289	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs377453348	chr6:32396293-32396294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148523115	chr6:32396303-32396304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs544987583	chr6:32396305-32396306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:131)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Lung cancer	18438408	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22844521	CNVD
Gestational infection	22844521	CNVD
HIV/AIDS	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Ovarian cancer	21781307	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Myelofibrosis	22110671	CNVD
Incontinentia Pigmenti	22033527	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Encephalopathy	20692195	CNVD
Immune disease	17576883	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Rheumatoid arthritis	22536334	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD

Chromatin state (count:515 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32390000-32410000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:32394200-32395800	Enhancers	Liver	Liver
3	chr6:32395000-32395600	Enhancers	HepG2	liver
4	chr6:32395200-32395600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:32400000-32400600	Enhancers	GM12878-XiMat	blood
6	chr6:32400600-32403600	Weak transcription	GM12878-XiMat	blood
7	chr6:32402600-32406800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:32403600-32404800	Enhancers	GM12878-XiMat	blood
9	chr6:32403600-32407000	Enhancers	Primary B cells from cord blood	blood
10	chr6:32404000-32404600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:32404000-32405000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:32404000-32406000	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:32404000-32407200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:32404200-32406200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:32404400-32405800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr6:32404400-32406000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:32404600-32405000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:32404800-32405200	Enhancers	Fetal Thymus	thymus
19	chr6:32404800-32405800	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:32405000-32405200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:32405000-32405200	Enhancers	Thymus	Thymus
22	chr6:32405000-32405400	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:32405000-32405400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:32405000-32405400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:32405000-32405400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:32405000-32405800	Enhancers	Adipose Nuclei	Adipose
27	chr6:32405000-32405800	Enhancers	Duodenum Mucosa	Duodenum
28	chr6:32405200-32405600	Enhancers	Brain Substantia Nigra	brain
29	chr6:32405200-32407600	Weak transcription	Fetal Thymus	thymus
30	chr6:32405400-32405800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:32405400-32406200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:32405400-32406400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:32405400-32407400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:32405600-32405800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:32405600-32406000	Enhancers	Spleen	Spleen
36	chr6:32405600-32407400	Weak transcription	Brain Substantia Nigra	brain
37	chr6:32405800-32406000	Enhancers	Right Ventricle	heart
38	chr6:32405800-32407000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:32405800-32407000	Weak transcription	Adipose Nuclei	Adipose
40	chr6:32405800-32407000	Enhancers	GM12878-XiMat	blood
41	chr6:32405800-32407000	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr6:32405800-32407200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr6:32405800-32407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:32406000-32407000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:32406000-32407000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:32406000-32407000	Weak transcription	Right Ventricle	heart
47	chr6:32406000-32407200	Weak transcription	Spleen	Spleen
48	chr6:32406200-32406600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:32406200-32406600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:32406600-32407000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links