Variant report

Variant	esv1810517
Chromosome Location	chr4:187353341-187357757
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1
2	lnc-MTNR1A-1	chr4:187353299-187353392	NONHSAT099658
3	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1

Extended variants
information (count: 458 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:458 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563117499	chr4:187353349-187353350	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
2	rs368670369	chr4:187353351-187353352	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
3	rs538452317	chr4:187353352-187353353	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
4	rs67831206	chr4:187353362-187353363	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs376816987	chr4:187353368-187353369	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs377421122	chr4:187353370-187353371	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs561642533	chr4:187353373-187353374	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
8	rs527289730	chr4:187353381-187353382	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs547420423	chr4:187353382-187353383	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs570449095	chr4:187353387-187353388	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
11	rs66481440	chr4:187353388-187353389	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs66985092	chr4:187353390-187353391	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs569541354	chr4:187353396-187353397	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs147044759	chr4:187353400-187353401	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs548880498	chr4:187353405-187353406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568073470	chr4:187353406-187353407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533945190	chr4:187353436-187353437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs66664377	chr4:187353437-187353438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs368691783	chr4:187353438-187353439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112539522	chr4:187353444-187353445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs543858793	chr4:187353451-187353452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112562683	chr4:187353456-187353457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs73873608	chr4:187353459-187353460	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs200158340	chr4:187353460-187353461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111380525	chr4:187353472-187353473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141823844	chr4:187353473-187353474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs114317696	chr4:187353474-187353475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs373078971	chr4:187353480-187353481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs562368400	chr4:187353482-187353483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs572743397	chr4:187353484-187353485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373057818	chr4:187353485-187353486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs371592964	chr4:187353486-187353487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113533981	chr4:187353487-187353488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375866622	chr4:187353491-187353492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs66712407	chr4:187353492-187353493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs79417939	chr4:187353497-187353498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs149135742	chr4:187353500-187353501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs57066319	chr4:187353508-187353509	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs77800306	chr4:187353510-187353511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74631651	chr4:187353518-187353519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs74338499	chr4:187353520-187353521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs547461266	chr4:187353527-187353528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370132528	chr4:187353533-187353534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs184825523	chr4:187353542-187353543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367709383	chr4:187353546-187353547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372920226	chr4:187353550-187353551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368020824	chr4:187353554-187353555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376668631	chr4:187353555-187353556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs58846051	chr4:187353556-187353557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs372542024	chr4:187353557-187353558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16774939	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	17053054	CNVD
Facioscapulohumeral muscular dystrophy	21829175	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	20844748	CNVD
Autism	18414403	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Breast cancer	20409316	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Developmental delay	22127048	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cervical cancer	21063398	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187353200-187353400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:187353200-187354000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:187354000-187354400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:187354000-187357000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:187354400-187357000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:187357000-187357200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:187357000-187357800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:187357000-187357800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:187357000-187357800	ZNF genes & repeats	Gastric	stomach
10	chr4:187357600-187357800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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