Variant report

Variant	esv1810619
Chromosome Location	chr10:110435038-110463874
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADD3-12	chr10:110460266-110460283	NONHSAT016306

Extended variants
information (count: 617 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:617 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564766366	chr10:110442017-110442018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs145177929	chr10:110442044-110442045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs550428649	chr10:110442053-110442054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs149131605	chr10:110442058-110442059	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs529431719	chr10:110442062-110442063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs112826816	chr10:110442067-110442068	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs565985384	chr10:110442087-110442088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs537005056	chr10:110442088-110442089	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs557716451	chr10:110442093-110442094	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs193150933	chr10:110442139-110442140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs7895919	chr10:110442145-110442146	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs151264132	chr10:110442157-110442158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs374333348	chr10:110442180-110442181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs140686708	chr10:110442197-110442198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs371576213	chr10:110442198-110442199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs374472403	chr10:110442221-110442222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs535302217	chr10:110442234-110442235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185098535	chr10:110442246-110442247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs560930806	chr10:110442270-110442271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187540724	chr10:110442279-110442280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116941695	chr10:110442314-110442315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564872746	chr10:110442398-110442399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs145793207	chr10:110442413-110442414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544209962	chr10:110442458-110442459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs553322144	chr10:110442461-110442462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560780083	chr10:110442488-110442489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs575052651	chr10:110442525-110442526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs529741863	chr10:110442535-110442536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs138493603	chr10:110442564-110442565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79675773	chr10:110442565-110442566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs528739612	chr10:110442576-110442577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs75157063	chr10:110442600-110442601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs68167147	chr10:110442601-110442602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs386372408	chr10:110442602-110442603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78834789	chr10:110442603-110442604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs61512837	chr10:110442604-110442605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551759002	chr10:110442623-110442624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571927329	chr10:110442674-110442675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537013317	chr10:110442714-110442715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113323032	chr10:110442739-110442740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs191659186	chr10:110442752-110442753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536782778	chr10:110442754-110442755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs553187383	chr10:110442755-110442756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12571888	chr10:110442756-110442757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs12571889	chr10:110442762-110442763	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs558537447	chr10:110442774-110442775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575503115	chr10:110442785-110442786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs543814180	chr10:110442796-110442797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs139065628	chr10:110442812-110442813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560984037	chr10:110442819-110442820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110442000-110442200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:110442200-110445800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:110443800-110444600	Enhancers	Fetal Stomach	stomach
4	chr10:110444800-110446200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:110445600-110446200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:110445600-110446400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:110445800-110446000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:110445800-110446200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:110453800-110454000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:110453800-110454000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:110455400-110456200	Enhancers	GM12878-XiMat	blood
12	chr10:110456200-110457600	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:110456400-110457200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:110457200-110457400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:110457600-110457800	Enhancers	GM12878-XiMat	blood
16	chr10:110457800-110472400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:110462200-110462400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:110462200-110462600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:110462400-110463800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:110463800-110464200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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