Variant report
| Variant | esv1813308 |
|---|---|
| Chromosome Location | chr10:96845173-96846646 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs577682042 | chr10:96846215-96846216 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs546653081 | chr10:96846335-96846336 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs370726404 | chr10:96846355-96846356 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs566903054 | chr10:96846359-96846360 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs544527338 | chr10:96846385-96846386 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs61364796 | chr10:96846386-96846387 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs140009806 | chr10:96846393-96846394 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs540049423 | chr10:96846394-96846395 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs74711272 | chr10:96846417-96846418 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs529084980 | chr10:96846431-96846432 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs542599551 | chr10:96846433-96846434 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs376442494 | chr10:96846438-96846439 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs190977167 | chr10:96846460-96846461 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs531226525 | chr10:96846461-96846462 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs386746717 | chr10:96846469-96846470 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs1326829 | chr10:96846470-96846471 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs527334352 | chr10:96846495-96846496 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs547510448 | chr10:96846510-96846511 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs1326828 | chr10:96846540-96846541 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 20 | rs536031578 | chr10:96846602-96846603 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs78266701 | chr10:96846646-96846647 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:69)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Usher syndrome | 20538994 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Submicroscopic aberration syndrome | 21292638 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Colorectal cancer | 18645599 | CNVD |
| Polyposis syndrome | 18645599 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Glioblastoma multiforme | 17369134 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Breast cancer | 21364760 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Chronic lymphocytic leukemia | 21049055 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 24453001 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:96846200-96847200 | Enhancers | HepG2 | liver |
