Variant report

Variant	esv18143
Chromosome Location	chr9:11106326-11109319
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTPRD-2	chr9:11108072-11109984	XLOC_007644

Variant related genes	Relation type
CSRNP3	miRNA target sites

Extended variants
information (count: 193 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:193 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142305641	chr9:11106352-11106353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs544457785	chr9:11106402-11106403	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs60225237	chr9:11106419-11106420	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs530248424	chr9:11106422-11106423	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs555217435	chr9:11106442-11106443	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554559177	chr9:11106454-11106455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187407873	chr9:11106463-11106464	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs1577125	chr9:11106487-11106488	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs570228912	chr9:11106508-11106509	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs113647358	chr9:11106516-11106517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs191127735	chr9:11106550-11106551	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs34778885	chr9:11106569-11106570	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568732674	chr9:11106596-11106597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs151272354	chr9:11106622-11106623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs4741112	chr9:11106638-11106639	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs554325414	chr9:11106644-11106645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs72694225	chr9:11106656-11106657	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs540058839	chr9:11106657-11106658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs536289267	chr9:11106689-11106690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141594835	chr9:11106732-11106733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs578016568	chr9:11106741-11106742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537309362	chr9:11106746-11106747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566476190	chr9:11106752-11106753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201041033	chr9:11106763-11106764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183223851	chr9:11106766-11106767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs558158774	chr9:11106791-11106792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201719856	chr9:11106812-11106813	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs575154585	chr9:11106816-11106817	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs73397301	chr9:11106831-11106832	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs113456635	chr9:11106898-11106899	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs574931772	chr9:11106903-11106904	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs542807541	chr9:11106910-11106911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs540520769	chr9:11106925-11106926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs73399204	chr9:11106955-11106956	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs532887301	chr9:11106990-11106991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs546194777	chr9:11107014-11107015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs1334034	chr9:11107045-11107046	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs531622001	chr9:11107054-11107055	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs147754432	chr9:11107076-11107077	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs372017146	chr9:11107077-11107078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs113432180	chr9:11107086-11107087	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546424784	chr9:11107108-11107109	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs566408598	chr9:11107113-11107114	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs186828898	chr9:11107122-11107123	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs552070195	chr9:11107136-11107137	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs376614036	chr9:11107141-11107142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568797507	chr9:11107162-11107163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs112552023	chr9:11107219-11107220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs541787137	chr9:11107227-11107228	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs1577124	chr9:11107236-11107237	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:101)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:11104000-11107800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:11106400-11106600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:11106600-11107200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:11106800-11108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:11107200-11108000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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