Variant report

Variant	esv1815310
Chromosome Location	chr10:769044-784562
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:778218..778758-chr10:824666..825446,2	MCF-7	breast:
2	chr10:783561..786479-chr10:789093..790752,2	MCF-7	breast:
3	chr10:778218..778962-chr10:824579..825446,5	MCF-7	breast:
4	chr10:757872..760729-chr10:776939..779568,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf108-6	chr10:779932-779973	NONHSAT010872
2	lnc-C10orf108-6	chr10:780517-780898	NONHSAT010872

Variant related genes	Relation type
ENSG00000231601	chromatin interactions

Extended variants
information (count: 1072 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1072 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115934526	chr10:769078-769079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs184459107	chr10:769116-769117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs140322297	chr10:769122-769123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs71494928	chr10:769134-769135	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs34163266	chr10:769137-769138	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs142734980	chr10:769142-769143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs7092142	chr10:769148-769149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558194552	chr10:769194-769195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71376852	chr10:769199-769200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs61831381	chr10:769200-769201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs577733720	chr10:769213-769214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs537024188	chr10:769217-769218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2486583	chr10:769218-769219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs556968459	chr10:769221-769222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11253357	chr10:769225-769226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564109493	chr10:769226-769227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79115643	chr10:769232-769233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79768753	chr10:769238-769239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs111278801	chr10:769244-769245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs78897485	chr10:769255-769256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs71376853	chr10:769270-769271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs9419544	chr10:769292-769293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs546463306	chr10:769293-769294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs145032959	chr10:769299-769300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs1769229	chr10:769304-769305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs2766016	chr10:769310-769311	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs2790384	chr10:769316-769317	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs2790383	chr10:769322-769323	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs2790382	chr10:769333-769334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561838203	chr10:769339-769340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs111235518	chr10:769356-769357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs572164245	chr10:769368-769369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs111568200	chr10:769369-769370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs1617177	chr10:769374-769375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540884691	chr10:769377-769378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111884458	chr10:769381-769382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs111868248	chr10:769382-769383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs71494929	chr10:769388-769389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71494930	chr10:769394-769395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71494931	chr10:769400-769401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs71494932	chr10:769411-769412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs71494933	chr10:769434-769435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs564142003	chr10:769441-769442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113828368	chr10:769447-769448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11253358	chr10:769452-769453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11253359	chr10:769459-769460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs111733319	chr10:769460-769461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs112197840	chr10:769466-769467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111931233	chr10:769472-769473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs111956959	chr10:769478-769479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:764800-772000	Weak transcription	Right Atrium	heart
2	chr10:768600-770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:768600-771400	Weak transcription	Spleen	Spleen
4	chr10:769000-771600	Weak transcription	Placenta	Placenta
5	chr10:770000-770200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:770000-770200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:770000-770400	Enhancers	Pancreas	Pancrea
8	chr10:770200-771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:770800-771000	Weak transcription	Esophagus	oesophagus
10	chr10:770800-772200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:771400-771600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:771400-772200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:771400-772200	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr10:771400-772200	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:771400-772200	Enhancers	Fetal Muscle Leg	muscle
16	chr10:771400-772200	Enhancers	Spleen	Spleen
17	chr10:771400-773000	Enhancers	Right Ventricle	heart
18	chr10:771600-771800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:771600-772000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:771600-772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:771600-774800	Enhancers	Placenta	Placenta
22	chr10:771800-772200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:771800-772400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr10:772000-772200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:772000-772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:772000-772200	Enhancers	Esophagus	oesophagus
27	chr10:772000-773400	Strong transcription	Right Atrium	heart
28	chr10:772200-772600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:772400-772800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr10:772600-773000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:772800-773200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:772800-773600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:773000-775200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:773400-775200	Weak transcription	Right Atrium	heart
35	chr10:774600-774800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:774600-774800	Enhancers	Right Ventricle	heart
37	chr10:774600-775400	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr10:774600-775600	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:775200-775400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:775400-775600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
41	chr10:775400-776000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:775600-775800	Enhancers	Pancreas	Pancrea
43	chr10:775800-779400	Weak transcription	Pancreas	Pancrea
44	chr10:776000-779200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:778000-778200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:778600-779400	Enhancers	Placenta	Placenta
47	chr10:779200-779400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:779400-779600	Enhancers	Esophagus	oesophagus
49	chr10:779400-779600	Enhancers	Gastric	stomach
50	chr10:779400-779600	Enhancers	Pancreas	Pancrea

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