Variant report

Variant	esv1815316
Chromosome Location	chr10:96666085-96682514
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 292 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:292 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2860903	chr10:96666085-96666086	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs372770761	chr10:96666091-96666092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs1853206	chr10:96666107-96666108	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs368911755	chr10:96666110-96666111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs530678331	chr10:96666172-96666173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185244145	chr10:96666181-96666182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559716171	chr10:96666199-96666200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539624192	chr10:96666207-96666208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564107758	chr10:96666211-96666212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs556750499	chr10:96666229-96666230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560803100	chr10:96666273-96666274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs532831743	chr10:96666316-96666317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs75075655	chr10:96666317-96666318	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
14	rs558665201	chr10:96666328-96666329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373993668	chr10:96666337-96666338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529010361	chr10:96666387-96666388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs376438830	chr10:96666402-96666403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548755909	chr10:96666440-96666441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs117592711	chr10:96666474-96666475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537736201	chr10:96666479-96666480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576986959	chr10:96666498-96666499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7917253	chr10:96666504-96666505	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs571669213	chr10:96666561-96666562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190776494	chr10:96666570-96666571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs140840321	chr10:96666588-96666589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs115401006	chr10:96666597-96666598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183390707	chr10:96666625-96666626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7917500	chr10:96666666-96666667	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs11188112	chr10:96666699-96666700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs544486998	chr10:96666700-96666701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76183788	chr10:96666709-96666710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577542201	chr10:96666755-96666756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368733893	chr10:96666780-96666781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs532922038	chr10:96666826-96666827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs116882736	chr10:96666860-96666861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560197417	chr10:96666864-96666865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563463608	chr10:96666878-96666879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113964574	chr10:96666879-96666880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530797124	chr10:96666982-96666983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs74944800	chr10:96667054-96667055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs72818612	chr10:96667058-96667059	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs542261328	chr10:96667077-96667078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551233620	chr10:96667079-96667080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149735739	chr10:96667080-96667081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs540142624	chr10:96667102-96667103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs76237698	chr10:96667134-96667135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562171154	chr10:96667137-96667138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369983975	chr10:96667193-96667194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566531575	chr10:96667196-96667197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs535551150	chr10:96667227-96667228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96665000-96668200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:96665400-96668200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:96668200-96668800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:96668200-96669200	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr10:96675800-96677400	Enhancers	Liver	Liver
6	chr10:96680800-96681400	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr10:96681000-96681400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr10:96681400-96695600	Weak transcription	Fetal Intestine Small	intestine

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