Variant report
Variant | esv1817816 |
---|---|
Chromosome Location | chr10:37399856-37484107 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:160)
- CpG islands (count:793)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr10:37442159-37442261 | K562 | blood: | n/a | n/a |
2 | CTCF | chr10:37435382-37435591 | MCF-7 | breast: | n/a | n/a |
3 | CTCF | chr10:37435260-37435410 | A549 | lung: | n/a | n/a |
4 | CTCF | chr10:37435420-37435570 | Caco-2 | colon: | n/a | n/a |
5 | CTCF | chr10:37435440-37435590 | WERI-Rb-1 | eye: | n/a | n/a |
6 | CTCF | chr10:37435431-37435556 | HepG2 | liver: | n/a | n/a |
7 | CTCF | chr10:37424265-37424332 | GM10248 | blood: | n/a | n/a |
8 | CTCF | chr10:37435386-37435516 | MCF-7 | breast: | n/a | n/a |
9 | CTCF | chr10:37418889-37418975 | Lung_OC | lung: | n/a | n/a |
10 | CTCF | chr10:37406840-37406990 | NB4 | blood: | n/a | n/a |
11 | CTCF | chr10:37452696-37452762 | Kidney_OC | kidney: | n/a | n/a |
12 | CTCF | chr10:37401238-37401345 | GM10248 | blood: | n/a | n/a |
13 | CTCF | chr10:37481138-37481209 | Kidney_OC | kidney: | n/a | n/a |
14 | CTCF | chr10:37446718-37446806 | Lung_OC | lung: | n/a | n/a |
15 | CTCF | chr10:37435400-37435550 | NB4 | blood: | n/a | n/a |
16 | CTCF | chr10:37406827-37406960 | MCF-7 | breast: | n/a | n/a |
17 | CTCF | chr10:37432032-37432118 | Pancreas_OC | pancreas: | n/a | n/a |
18 | CTCF | chr10:37435309-37435701 | MCF-7 | breast: | n/a | n/a |
19 | CTCF | chr10:37406866-37406917 | MCF-7 | breast: | n/a | n/a |
20 | CTCF | chr10:37435447-37435520 | ProgFib | skin: | n/a | n/a |
21 | CTCF | chr10:37435502-37435529 | Medullo | brain: | n/a | n/a |
22 | CTCF | chr10:37430709-37430736 | LNCaP | prostate: | n/a | n/a |
23 | CTCF | chr10:37475018-37475056 | Spleen_OC | spleen: | n/a | n/a |
24 | CTCF | chr10:37469711-37469782 | Lung_OC | lung: | n/a | n/a |
25 | CTCF | chr10:37447106-37447182 | Spleen_OC | spleen: | n/a | n/a |
26 | CTCF | chr10:37452481-37452521 | Medullo | brain: | n/a | n/a |
27 | CTCF | chr10:37435380-37435587 | MCF-7 | breast: | n/a | n/a |
28 | CTCF | chr10:37435531-37435558 | Lung_OC | lung: | n/a | n/a |
29 | CTCF | chr10:37435400-37435550 | MCF-7 | breast: | n/a | n/a |
30 | CTCF | chr10:37435417-37435570 | LNCaP | prostate: | n/a | n/a |
31 | CTCF | chr10:37435257-37435682 | MCF-7 | breast: | n/a | n/a |
32 | CTCF | chr10:37442131-37442208 | GM20000 | blood: | n/a | n/a |
33 | CTCF | chr10:37477527-37477727 | Lung_OC | lung: | n/a | n/a |
34 | CTCF | chr10:37435400-37435550 | Caco-2 | colon: | n/a | n/a |
35 | CTCF | chr10:37435480-37435630 | A549 | lung: | n/a | n/a |
36 | CTCF | chr10:37423479-37423562 | Pancreas_OC | pancreas: | n/a | n/a |
37 | CTCF | chr10:37435360-37435510 | HEK293 | kidney: | n/a | n/a |
38 | CTCF | chr10:37435382-37435557 | MCF-7 | breast: | n/a | n/a |
39 | CTCF | chr10:37435400-37435550 | HepG2 | liver: | n/a | n/a |
40 | CTCF | chr10:37458752-37458787 | Lung_OC | lung: | n/a | n/a |
41 | CTCF | chr10:37435405-37435569 | A549 | lung: | n/a | n/a |
42 | CTCF | chr10:37406848-37406918 | MCF-7 | breast: | n/a | n/a |
43 | CTCF | chr10:37438290-37438316 | GM13976 | blood: | n/a | n/a |
44 | CTCF | chr10:37435407-37435587 | LNCaP | prostate: | n/a | n/a |
45 | CTCF | chr10:37435360-37435606 | MCF-7 | breast: | n/a | n/a |
46 | CUX1 | chr10:37411761-37411766 | K562 | blood: | n/a | n/a |
47 | E2F4 | chr10:37399834-37399925 | MCF10A-Er-Src | breast: | n/a | n/a |
48 | E2F4 | chr10:37446270-37446422 | MCF10A-Er-Src | breast: | n/a | n/a |
49 | EP300 | chr10:37435311-37435980 | A549 | lung: | n/a | n/a |
50 | EP300 | chr10:37435287-37436021 | A549 | lung: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:37414261-37414311 | NT2-D1 | testis: | n/a |
2 | chr10:37414736-37414786 | HCM | heart: | n/a |
3 | chr10:37414759-37414809 | AG04449 | skin: | fetal |
4 | chr10:37414261-37414311 | HRE | kidney: | n/a |
5 | chr10:37413610-37413660 | HEK293 | kidney: | embryo |
6 | chr10:37413676-37413726 | GM12892 | blood: | n/a |
7 | chr10:37413799-37413849 | Hepatocyte | liver: | n/a |
8 | chr10:37413610-37413660 | HMEC | breast: | n/a |
9 | chr10:37414597-37414647 | SK-N-SH | brain: | n/a |
10 | chr10:37413610-37413660 | HCM | heart: | n/a |
11 | chr10:37414736-37414786 | AG09309 | skin: | n/a |
12 | chr10:37413610-37413660 | HRPEpiC | eye: | n/a |
13 | chr10:37414759-37414809 | GM12878 | blood: | n/a |
14 | chr10:37414768-37414818 | K562 | blood: | n/a |
15 | chr10:37414733-37414783 | ProgFib | skin: | n/a |
16 | chr10:37413610-37413660 | PANC-1 | pancreas: | n/a |
17 | chr10:37413610-37413660 | ProgFib | skin: | n/a |
18 | chr10:37414759-37414809 | GM06990 | blood: | n/a |
19 | chr10:37413610-37413660 | HL-60 | blood: | n/a |
20 | chr10:37413610-37413660 | RPTEC | kidney: | n/a |
21 | chr10:37414506-37414556 | IMR90 | lung: | fetal |
22 | chr10:37414733-37414783 | HepG2 | liver: | n/a |
23 | chr10:37418731-37418781 | NH-A | brain: | n/a |
24 | chr10:37414261-37414311 | SKMC | muscle: | n/a |
25 | chr10:37414802-37414852 | Hepatocyte | liver: | n/a |
26 | chr10:37413676-37413726 | IMR90 | lung: | fetal |
27 | chr10:37413610-37413660 | HCT-116 | colon: | n/a |
28 | chr10:37413610-37413660 | Hela-S3 | cervix: | n/a |
29 | chr10:37414506-37414556 | AG09319 | gingival: | n/a |
30 | chr10:37414261-37414311 | HCM | heart: | n/a |
31 | chr10:37414733-37414783 | ECC-1 | luminal epithelium: | n/a |
32 | chr10:37418731-37418781 | HPAEpiC | pulmonary alveolar: | n/a |
33 | chr10:37414261-37414311 | AG10803 | skin: | n/a |
34 | chr10:37414261-37414311 | GM12878 | blood: | n/a |
35 | chr10:37414802-37414852 | HepG2 | liver: | n/a |
36 | chr10:37413676-37413726 | U87 | brain: | n/a |
37 | chr10:37418731-37418781 | GM19239 | blood: | n/a |
38 | chr10:37414768-37414818 | U87 | brain: | n/a |
39 | chr10:37414802-37414852 | SK-N-MC | brain: | n/a |
40 | chr10:37414736-37414786 | CMK | blood: | n/a |
41 | chr10:37418731-37418781 | K562 | blood: | n/a |
42 | chr10:37414597-37414647 | NB4 | blood: | n/a |
43 | chr10:37414597-37414647 | HUVEC | blood vessel: | n/a |
44 | chr10:37414768-37414818 | H1-hESC | embryonic stem cell: | embryo |
45 | chr10:37414733-37414783 | HEEpiC | esophagus: | n/a |
46 | chr10:37413676-37413726 | GM12878 | blood: | n/a |
47 | chr10:37414759-37414809 | HepG2 | liver: | n/a |
48 | chr10:37414768-37414818 | HIPEpiC | eye: | n/a |
49 | chr10:37414597-37414647 | MCF-7 | breast: | n/a |
50 | chr10:37414733-37414783 | SKMC | muscle: | n/a |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:37188694..37189693-chr10:37435453..37435966,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ANKRD30A | TF binding region |
RNU6-811P | TF binding region |
ANKRD30A | CpG island |
RNU6-811P | CpG island |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs186296884 | chr10:37399892-37399893 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs563742989 | chr10:37399902-37399903 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs72787507 | chr10:37399940-37399941 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs77658298 | chr10:37399942-37399943 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs191189761 | chr10:37399951-37399952 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs368333963 | chr10:37400027-37400028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs180857402 | chr10:37400122-37400123 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs527901384 | chr10:37400132-37400133 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs35848001 | chr10:37400160-37400161 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs141069075 | chr10:37400165-37400166 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs548837846 | chr10:37400183-37400184 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs562362284 | chr10:37400225-37400226 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs531270227 | chr10:37400258-37400259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs4117181 | chr10:37400281-37400282 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs187415773 | chr10:37400334-37400335 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs539131181 | chr10:37400346-37400347 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs144796023 | chr10:37400377-37400378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs566479556 | chr10:37400383-37400384 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs547975234 | chr10:37400479-37400480 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs535249192 | chr10:37400481-37400482 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs1767355 | chr10:37400485-37400486 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs565587767 | chr10:37400486-37400487 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs575178712 | chr10:37400505-37400506 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs537751180 | chr10:37400510-37400511 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs557031370 | chr10:37400577-37400578 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs371853871 | chr10:37400583-37400584 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs200457708 | chr10:37400621-37400622 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs376563520 | chr10:37400623-37400624 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs61108151 | chr10:37400626-37400627 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs34081730 | chr10:37400627-37400628 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs34938273 | chr10:37400629-37400630 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs34191445 | chr10:37400631-37400632 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs201321576 | chr10:37400657-37400658 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs200168914 | chr10:37400659-37400660 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs572266888 | chr10:37400660-37400661 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs202014354 | chr10:37400664-37400665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs577182508 | chr10:37400670-37400671 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs397956079 | chr10:37400676-37400677 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs559773448 | chr10:37400697-37400698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs370112846 | chr10:37400710-37400711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs536722917 | chr10:37400717-37400718 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs536063469 | chr10:37400733-37400734 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs550246891 | chr10:37400898-37400899 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs113364463 | chr10:37401328-37401329 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs111450105 | chr10:37401342-37401343 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs542442138 | chr10:37401508-37401509 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs562272632 | chr10:37401644-37401645 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs531191204 | chr10:37402020-37402021 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs373394676 | chr10:37402027-37402028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs551274271 | chr10:37402039-37402040 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Lung cancer | 18438408 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Oral cancer | 21386901 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Behavioral abnormalities | 21522184 | CNVD |
Dysmorphic features | 21522184 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Bethlem myopathy | 20302629 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hepatocellular carcinoma | 16785998 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Cancer | 20164919 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:37399000-37400000 | ZNF genes & repeats | A549 | lung |
2 | chr10:37400000-37405000 | Weak transcription | A549 | lung |
3 | chr10:37405000-37405200 | Enhancers | A549 | lung |
4 | chr10:37405200-37405600 | Active TSS | A549 | lung |
5 | chr10:37405400-37406000 | Active TSS | Placenta | Placenta |
6 | chr10:37405600-37405800 | Weak transcription | A549 | lung |
7 | chr10:37405800-37406800 | Enhancers | A549 | lung |
8 | chr10:37406800-37407600 | Weak transcription | A549 | lung |
9 | chr10:37407600-37408000 | Enhancers | A549 | lung |
10 | chr10:37413400-37414800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
11 | chr10:37418200-37418800 | Active TSS | A549 | lung |
12 | chr10:37422800-37423200 | Enhancers | Adipose Nuclei | Adipose |
13 | chr10:37434600-37436000 | Enhancers | A549 | lung |
14 | chr10:37435200-37435600 | Bivalent Enhancer | iPS-20b Cell Line | embryonic stem cell |
15 | chr10:37435200-37435800 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
16 | chr10:37435200-37435800 | Bivalent Enhancer | iPS-18 Cell Line | embryonic stem cell |
17 | chr10:37435600-37436200 | Bivalent/Poised TSS | iPS-20b Cell Line | embryonic stem cell |
18 | chr10:37436000-37439000 | Weak transcription | A549 | lung |
19 | chr10:37439000-37439400 | Active TSS | A549 | lung |
20 | chr10:37439400-37441200 | Weak transcription | A549 | lung |
21 | chr10:37441200-37441400 | Enhancers | A549 | lung |
22 | chr10:37446400-37447200 | Weak transcription | A549 | lung |
23 | chr10:37447800-37448400 | ZNF genes & repeats | A549 | lung |
24 | chr10:37448400-37454800 | Weak transcription | A549 | lung |
25 | chr10:37454800-37455200 | Enhancers | A549 | lung |
26 | chr10:37479600-37490800 | Weak transcription | A549 | lung |