Variant report

Variant	esv1821159
Chromosome Location	chr9:22748466-22749963
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 149 )

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527427	chr9:22748466-22748467	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs536592367	chr9:22748485-22748486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114537721	chr9:22748498-22748499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182908993	chr9:22748500-22748501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538464900	chr9:22748519-22748520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs558297481	chr9:22748524-22748525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs571831384	chr9:22748525-22748526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs540702670	chr9:22748527-22748528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs117886283	chr9:22748553-22748554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs557121245	chr9:22748561-22748562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544142766	chr9:22748605-22748606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs78226382	chr9:22748615-22748616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs16906505	chr9:22748661-22748662	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs552817695	chr9:22748749-22748750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527582807	chr9:22748765-22748766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs188363830	chr9:22748808-22748809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542948613	chr9:22748819-22748820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528633865	chr9:22748821-22748822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548695196	chr9:22748862-22748863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568490663	chr9:22748864-22748865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537056469	chr9:22748868-22748869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs376532590	chr9:22748892-22748893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368497719	chr9:22749041-22749042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs842850	chr9:22749060-22749061	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs192297618	chr9:22749064-22749065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7022163	chr9:22749091-22749092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs531226282	chr9:22749120-22749121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75733588	chr9:22749150-22749151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs571892457	chr9:22749170-22749171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs631634	chr9:22749173-22749174	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs116957107	chr9:22749179-22749180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs150646405	chr9:22749216-22749217	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs187623404	chr9:22749240-22749241	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543057581	chr9:22749242-22749243	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs10965439	chr9:22749253-22749254	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs570988280	chr9:22749263-22749264	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563259681	chr9:22749285-22749286	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113269267	chr9:22749305-22749306	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs538381987	chr9:22749313-22749314	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs368831261	chr9:22749315-22749316	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs577487696	chr9:22749317-22749318	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs632453	chr9:22749335-22749336	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs560030604	chr9:22749349-22749350	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs528695891	chr9:22749351-22749352	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs542397564	chr9:22749353-22749354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs566143692	chr9:22749355-22749356	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562051717	chr9:22749359-22749360	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs531000999	chr9:22749391-22749392	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs550721925	chr9:22749415-22749416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7022655	chr9:22749418-22749419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:149)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Cancer	20581869	CNVD
Oral cancer	22144094	CNVD
Barrett''s syndrome	19417022	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21364760	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21525872	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22725800-22801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:22738800-22778800	Weak transcription	Liver	Liver
3	chr9:22749200-22749400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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