Variant report

Variant	esv18213
Chromosome Location	chr6:78009962-78011477
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537698867	chr6:78009982-78009983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570116284	chr6:78009996-78009997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs184698969	chr6:78010010-78010011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs72896678	chr6:78010047-78010048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs549391922	chr6:78010126-78010127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544152129	chr6:78010138-78010139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs76403620	chr6:78010185-78010186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553196228	chr6:78010192-78010193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190025964	chr6:78010207-78010208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182166010	chr6:78010220-78010221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556812786	chr6:78010338-78010339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs186092572	chr6:78010429-78010430	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs575288414	chr6:78010488-78010489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542262779	chr6:78010506-78010507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs534676484	chr6:78010525-78010526	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs73758577	chr6:78010593-78010594	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs572466519	chr6:78010613-78010614	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs113821548	chr6:78010614-78010615	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs181885786	chr6:78010629-78010630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs538245523	chr6:78010639-78010640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs533392280	chr6:78010671-78010672	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs545571065	chr6:78010680-78010681	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs563675748	chr6:78010716-78010717	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs140277498	chr6:78010742-78010743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs1342629	chr6:78010767-78010768	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs567677965	chr6:78010778-78010779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs185369294	chr6:78010818-78010819	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs376272111	chr6:78010861-78010862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs535295289	chr6:78010875-78010876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs369154479	chr6:78010881-78010882	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs373353938	chr6:78010913-78010914	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs35251899	chr6:78010928-78010929	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs575427614	chr6:78010986-78010987	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs150310056	chr6:78011020-78011021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs117415655	chr6:78011026-78011027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560716028	chr6:78011041-78011042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs190915196	chr6:78011042-78011043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557115315	chr6:78011046-78011047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs377514312	chr6:78011079-78011080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs375131973	chr6:78011166-78011167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs181280828	chr6:78011168-78011169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs572529321	chr6:78011204-78011205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540205150	chr6:78011225-78011226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553426669	chr6:78011258-78011259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs35600086	chr6:78011268-78011269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs186327968	chr6:78011270-78011271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs9784885	chr6:78011282-78011283	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs35884473	chr6:78011299-78011300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs79591851	chr6:78011307-78011308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs115089227	chr6:78011355-78011356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78003400-78016200	Weak transcription	Aorta	Aorta
2	chr6:78004400-78017000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:78009000-78010400	Weak transcription	Hela-S3	cervix
4	chr6:78009000-78011400	Weak transcription	HUVEC	blood vessel
5	chr6:78010400-78011000	Enhancers	Hela-S3	cervix
6	chr6:78011400-78011800	Enhancers	HUVEC	blood vessel

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