Variant report
Variant | esv1822009 |
---|---|
Chromosome Location | chr15:30372082-30956242 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4054)
- CpG islands (count:3053)
- Chromatin interactive region (count:3)
- LncRNA region (count:60)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr15:30917841-30918381 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr15:30917819-30918297 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr15:30941065-30941323 | HepG2 | liver: | n/a | chr15:30941184-30941200 chr15:30941198-30941214 |
4 | ATF1 | chr15:30917774-30918461 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr15:30942408-30942747 | K562 | blood: | n/a | n/a |
6 | ATF2 | chr15:30941959-30942874 | GM12878 | blood: | n/a | n/a |
7 | ATF2 | chr15:30917694-30918103 | GM12878 | blood: | n/a | n/a |
8 | ATF2 | chr15:30917709-30918426 | GM12878 | blood: | n/a | n/a |
9 | ATF2 | chr15:30917808-30918347 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | ATF2 | chr15:30918103-30918425 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | ATF3 | chr15:30917703-30918445 | A549 | lung: | n/a | n/a |
12 | BACH1 | chr15:30396041-30396079 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BATF | chr15:30832413-30833670 | GM12878 | blood: | n/a | chr15:30833063-30833074 |
14 | BATF | chr15:30428014-30428211 | GM12878 | blood: | n/a | n/a |
15 | BATF | chr15:30626371-30626674 | GM12878 | blood: | n/a | chr15:30626595-30626606 |
16 | BATF | chr15:30858799-30859444 | GM12878 | blood: | n/a | n/a |
17 | BATF | chr15:30939410-30939698 | GM12878 | blood: | n/a | n/a |
18 | BATF | chr15:30389801-30390448 | GM12878 | blood: | n/a | n/a |
19 | BATF | chr15:30763589-30764924 | GM12878 | blood: | n/a | n/a |
20 | BATF | chr15:30763002-30763213 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr15:30402631-30402999 | GM12878 | blood: | n/a | chr15:30402836-30402847 chr15:30402837-30402847 chr15:30402841-30402851 |
22 | BATF | chr15:30716939-30717383 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr15:30717407-30718307 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr15:30942101-30942823 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr15:30412052-30412331 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr15:30678631-30678956 | GM12878 | blood: | n/a | chr15:30678848-30678858 chr15:30678844-30678854 |
27 | BATF | chr15:30717393-30718193 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr15:30871617-30871985 | GM12878 | blood: | n/a | chr15:30871822-30871833 chr15:30871827-30871837 chr15:30871823-30871833 |
29 | BATF | chr15:30793866-30794121 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr15:30939417-30939718 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr15:30442191-30442458 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr15:30402704-30403029 | GM12878 | blood: | n/a | chr15:30402836-30402847 chr15:30402837-30402847 chr15:30402841-30402851 |
33 | BATF | chr15:30678661-30679029 | GM12878 | blood: | n/a | chr15:30678848-30678858 chr15:30678844-30678854 |
34 | BATF | chr15:30459001-30459247 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr15:30793879-30794120 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr15:30411642-30411805 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr15:30829434-30829723 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr15:30832414-30833216 | GM12878 | blood: | n/a | chr15:30833063-30833074 |
39 | BATF | chr15:30763776-30764872 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr15:30720885-30721174 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr15:30765290-30765504 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr15:30942098-30942760 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr15:30917720-30918566 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr15:30880957-30881265 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr15:30411972-30412280 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr15:30765283-30765578 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr15:30871690-30872015 | GM12878 | blood: | n/a | chr15:30871822-30871833 chr15:30871827-30871837 chr15:30871823-30871833 |
48 | BATF | chr15:30881037-30881316 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr15:30691171-30691739 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr15:30626382-30626790 | GM12878 | blood: | n/a | chr15:30626595-30626606 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:30435199-30435249 | AoSMC | blood vessel: | n/a |
2 | chr15:30515844-30515894 | ProgFib | skin: | n/a |
3 | chr15:30517601-30517651 | AG09319 | gingival: | n/a |
4 | chr15:30435199-30435249 | AoSMC | blood vessel: | n/a |
5 | chr15:30515844-30515894 | ProgFib | skin: | n/a |
6 | chr15:30517601-30517651 | AG09319 | gingival: | n/a |
7 | chr15:30917958-30918008 | SK-N-SH | brain: | n/a |
8 | chr15:30517589-30517639 | IMR90 | lung: | fetal |
9 | chr15:30483519-30483569 | HCT-116 | colon: | n/a |
10 | chr15:30918313-30918363 | HAEpiC | amniotic membrane: | n/a |
11 | chr15:30816232-30816282 | HPAEpiC | pulmonary alveolar: | n/a |
12 | chr15:30918339-30918389 | SK-N-MC | brain: | n/a |
13 | chr15:30518064-30518114 | HPAEpiC | pulmonary alveolar: | n/a |
14 | chr15:30486767-30486817 | ECC-1 | luminal epithelium: | n/a |
15 | chr15:30763199-30763249 | NHDF-neo | bronchial: | n/a |
16 | chr15:30483647-30483697 | A549 | lung: | n/a |
17 | chr15:30487914-30487964 | AG09319 | gingival: | n/a |
18 | chr15:30515162-30515212 | Hela-S3 | cervix: | n/a |
19 | chr15:30483519-30483569 | HEEpiC | esophagus: | n/a |
20 | chr15:30396121-30396171 | AG10803 | skin: | n/a |
21 | chr15:30896216-30896266 | MCF-7 | breast: | n/a |
22 | chr15:30918595-30918645 | NHDF-neo | bronchial: | n/a |
23 | chr15:30844060-30844110 | SK-N-SH | brain: | n/a |
24 | chr15:30487914-30487964 | HAEpiC | amniotic membrane: | n/a |
25 | chr15:30865191-30865241 | GM12878 | blood: | n/a |
26 | chr15:30699977-30700027 | U87 | brain: | n/a |
27 | chr15:30918339-30918389 | HNPCEpiC | eye: | n/a |
28 | chr15:30515162-30515212 | SK-N-SH_RA | brain: | n/a |
29 | chr15:30763487-30763537 | NH-A | brain: | n/a |
30 | chr15:30487914-30487964 | SKMC | muscle: | n/a |
31 | chr15:30517601-30517651 | NH-A | brain: | n/a |
32 | chr15:30520018-30520068 | GM12891 | blood: | n/a |
33 | chr15:30483647-30483697 | MCF10A-Er-Src | breast: | n/a |
34 | chr15:30518064-30518114 | BE2_C | brain: | n/a |
35 | chr15:30865191-30865241 | HRE | kidney: | n/a |
36 | chr15:30896216-30896266 | Hela-S3 | cervix: | n/a |
37 | chr15:30434661-30434711 | HMEC | breast: | n/a |
38 | chr15:30919020-30919070 | AG04449 | skin: | fetal |
39 | chr15:30520018-30520068 | HCT-116 | colon: | n/a |
40 | chr15:30489014-30489064 | PFSK-1 | brain: | n/a |
41 | chr15:30700112-30700162 | Jurkat | blood: | n/a |
42 | chr15:30865200-30865250 | GM12878 | blood: | n/a |
43 | chr15:30917918-30917968 | HCT-116 | colon: | n/a |
44 | chr15:30917991-30918041 | GM12892 | blood: | n/a |
45 | chr15:30763199-30763249 | HRCEpiC | kidney: | n/a |
46 | chr15:30699977-30700027 | PFSK-1 | brain: | n/a |
47 | chr15:30517601-30517651 | HCPEpiC | choroid plexus: | n/a |
48 | chr15:30763199-30763249 | HCPEpiC | choroid plexus: | n/a |
49 | chr15:30486767-30486817 | ovcar-3 | ovarian: | n/a |
50 | chr15:30483519-30483569 | SAEC | small airway: | n/a |
(count:3 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CHRNA7-2 | chr15:30888863-30888941 | NONHSAT041366 |
2 | lnc-RP11-382B18.2.1-2 | chr15:30675522-30675585 | NONHSAT041347 |
3 | lnc-CHRFAM7A-2 | chr15:30649969-30650976 | ENSG00000270173.1 |
4 | lnc-CHRNA7-2 | chr15:30888863-30889187 | NONHSAT041367 |
5 | lnc-RP11-382B18.2.1-1 | chr15:30917254-30917976 | ENSG00000247728.2 |
6 | lnc-CHRFAM7A-1 | chr15:30462912-30462975 | ENSG00000259906.1 |
7 | lnc-CHRNA7-2 | chr15:30878081-30878127 | NONHSAT041368 |
8 | lnc-CHRFAM7A-1 | chr15:30471212-30471332 | ENSG00000259906.1 |
9 | lnc-RP11-382B18.2.1-2 | chr15:30673906-30674079 | NONHSAT041347 |
10 | lnc-AC120045.3-2 | chr15:30435925-30436203 | NONHSAT041332 |
11 | lnc-GOLGA8H-1 | chr15:30909161-30909952 | ENSG00000269930.1 |
12 | lnc-AC026150.9.1-5 | chr15:30702037-30703662 | NONHSAT041356 |
13 | lnc-ARHGAP11B-1 | chr15:30916697-30916815 | NONHSAT041376 |
14 | lnc-CHRNA7-2 | chr15:30892305-30892850 | NONHSAT140224 |
15 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041366 |
16 | lnc-ARHGAP11B-2 | chr15:30904916-30905194 | NONHSAT041372 |
17 | lnc-RP5-1086D14.3.1-1 | chr15:30491478-30491534 | ENSG00000225930.3 |
18 | lnc-RP11-382B18.2.1-1 | chr15:30917254-30917976 | ENSG00000247728 |
19 | lnc-GOLGA8H-2 | chr15:30941000-30941732 | ENSG00000269974.1 |
20 | lnc-AC026150.9.1-3 | chr15:30780166-30782516 | ENSG00000270055.1 |
21 | lnc-CHRNA7-2 | chr15:30888863-30888941 | NONHSAT140224 |
22 | lnc-RP11-382B18.2.1-1 | chr15:30857143-30857384 | ENSG00000247728 |
23 | lnc-RP5-1086D14.3.1-1 | chr15:30502620-30506743 | ENSG00000225930.3 |
24 | lnc-CHRNA7-2 | chr15:30892305-30892900 | NONHSAT041368 |
25 | lnc-CHRNA7-2 | chr15:30892305-30892911 | NONHSAT041366 |
26 | lnc-ARHGAP11B-1 | chr15:30917557-30918469 | NONHSAT041376 |
27 | lnc-AC026150.9.1-1 | chr15:30836768-30836863 | ENSG00000260693.1 |
28 | lnc-RP11-382B18.2.1-2 | chr15:30672556-30672602 | NONHSAT041347 |
29 | lnc-CHRFAM7A-1 | chr15:30462766-30462831 | ENSG00000259906.1 |
30 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT041368 |
31 | lnc-CHRFAM7A-3 | chr15:30697514-30697792 | NONHSAT041354 |
32 | lnc-RP11-382B18.2.1-3 | chr15:30899898-30900396 | ENSG00000270016.1 |
33 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT140224 |
34 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041368 |
35 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT140224 |
36 | lnc-RP5-1086D14.3.1-1 | chr15:30488239-30488317 | ENSG00000225930.3 |
37 | lnc-RP5-1086D14.3.1-1 | chr15:30488239-30488317 | ENSG00000225930.2 |
38 | lnc-RP11-382B18.2.1-1 | chr15:30909201-30909447 | ENSG00000247728.2 |
39 | lnc-RP5-1086D14.3.1-1 | chr15:30502620-30504471 | ENSG00000225930.2 |
40 | lnc-CHRNA7-2 | chr15:30864758-30864774 | NONHSAT041366 |
41 | lnc-RP11-382B18.2.1-2 | chr15:30679066-30679190 | NONHSAT041348 |
42 | lnc-RP5-1086D14.3.1-1 | chr15:30491478-30491534 | ENSG00000225930.2 |
43 | lnc-AC026150.9.1-1 | chr15:30838015-30838172 | ENSG00000260693.1 |
44 | lnc-ARHGAP11B-1 | chr15:30916926-30917019 | NONHSAT041376 |
45 | lnc-CHRNA7-2 | chr15:30865088-30865219 | NONHSAT041367 |
46 | lnc-RP11-382B18.2.1-2 | chr15:30675247-30675585 | NONHSAT041348 |
47 | lnc-CHRNA7-2 | chr15:30865172-30865219 | NONHSAT041366 |
48 | lnc-CHRNA7-2 | chr15:30871491-30871615 | NONHSAT041367 |
49 | lnc-RP11-382B18.2.1-2 | chr15:30679087-30679190 | NONHSAT041347 |
50 | lnc-CHRFAM7A-1 | chr15:30471079-30472146 | ENSG00000259906.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000221593 | TF binding region |
ENSG00000207430 | TF binding region |
RN7SL196P | TF binding region |
RN7SL628P | TF binding region |
GOLGA8H | TF binding region |
ULK4P3 | TF binding region |
ARHGAP11B | TF binding region |
RNU6-17P | TF binding region |
ENSG00000247728 | TF binding region |
RN7SL469P | TF binding region |
ENSG00000238519 | TF binding region |
ENSG00000260693 | TF binding region |
GOLGA8R | TF binding region |
RN7SL796P | TF binding region |
DNM1P50 | TF binding region |
ENSG00000238783 | TF binding region |
ENSG00000263070 | TF binding region |
ENSG00000225930 | TF binding region |
ENSG00000260784 | TF binding region |
ENSG00000270173 | TF binding region |
ENSG00000252602 | TF binding region |
ENSG00000271333 | TF binding region |
ENSG00000215302 | TF binding region |
ENSG00000221785 | TF binding region |
CHRFAM7A | TF binding region |
ENSG00000261747 | TF binding region |
ENSG00000221250 | TF binding region |
ENSG00000270016 | TF binding region |
ENSG00000221723 | TF binding region |
ENSG00000207432 | TF binding region |
RN7SL673P | TF binding region |
ULK4P2 | TF binding region |
GOLGA8T | TF binding region |
DNM1P30 | TF binding region |
ENSG00000269930 | TF binding region |
ENSG00000269974 | TF binding region |
ENSG00000259906 | TF binding region |
ENSG00000270055 | TF binding region |
GOLGA8J | TF binding region |
DNM1P28 | TF binding region |
ENSG00000270955 | TF binding region |
ENSG00000221358 | TF binding region |
ENSG00000259993 | TF binding region |
GOLGA8Q | TF binding region |
ENSG00000221593 | CpG island |
ENSG00000207430 | CpG island |
RN7SL196P | CpG island |
RN7SL628P | CpG island |
GOLGA8H | CpG island |
ULK4P3 | CpG island |
ARHGAP11B | CpG island |
RNU6-17P | CpG island |
ENSG00000247728 | CpG island |
RN7SL469P | CpG island |
ENSG00000238519 | CpG island |
ENSG00000260693 | CpG island |
GOLGA8R | CpG island |
RN7SL796P | CpG island |
DNM1P50 | CpG island |
ENSG00000238783 | CpG island |
ENSG00000263070 | CpG island |
ENSG00000225930 | CpG island |
ENSG00000260784 | CpG island |
ENSG00000270173 | CpG island |
ENSG00000252602 | CpG island |
ENSG00000271333 | CpG island |
ENSG00000215302 | CpG island |
ENSG00000221785 | CpG island |
CHRFAM7A | CpG island |
ENSG00000261747 | CpG island |
ENSG00000221250 | CpG island |
ENSG00000270016 | CpG island |
ENSG00000221723 | CpG island |
ENSG00000207432 | CpG island |
RN7SL673P | CpG island |
ULK4P2 | CpG island |
GOLGA8T | CpG island |
DNM1P30 | CpG island |
ENSG00000269930 | CpG island |
ENSG00000269974 | CpG island |
ENSG00000259906 | CpG island |
ENSG00000270055 | CpG island |
GOLGA8J | CpG island |
DNM1P28 | CpG island |
ENSG00000270955 | CpG island |
ENSG00000221358 | CpG island |
ENSG00000259993 | CpG island |
GOLGA8Q | CpG island |
ENSG00000198826 | chromatin interactions |
ENSG00000135916 | chromatin interactions |
ENSG00000262728 | chromatin interactions |
ENSG00000244952 | chromatin interactions |
PRKAB2 | miRNA target sites |
TGFB2 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs545034671 | chr15:30372087-30372088 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs560104945 | chr15:30372095-30372096 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs577403856 | chr15:30372098-30372099 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs191258211 | chr15:30372120-30372121 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs553579446 | chr15:30372121-30372122 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs572990468 | chr15:30372124-30372125 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs143872044 | chr15:30372149-30372150 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs561539257 | chr15:30372155-30372156 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs530422477 | chr15:30372158-30372159 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs531775170 | chr15:30372193-30372194 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs373558291 | chr15:30372197-30372198 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs544533981 | chr15:30372204-30372205 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs183219137 | chr15:30372251-30372252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs550468725 | chr15:30372256-30372257 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs369691518 | chr15:30372259-30372260 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs539334207 | chr15:30372267-30372268 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs546410665 | chr15:30372282-30372283 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs566294558 | chr15:30372313-30372314 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs150609807 | chr15:30372319-30372320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs528570716 | chr15:30372357-30372358 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs548344830 | chr15:30372364-30372365 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs568486949 | chr15:30372413-30372414 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs202085516 | chr15:30372426-30372427 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs537037807 | chr15:30372438-30372439 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs4275831 | chr15:30372459-30372460 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs199975592 | chr15:30372463-30372464 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs4448915 | chr15:30372466-30372467 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs7176620 | chr15:30372473-30372474 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs573427971 | chr15:30372475-30372476 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs9708145 | chr15:30372480-30372481 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs7177988 | chr15:30372495-30372496 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs544898267 | chr15:30372502-30372503 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs200341648 | chr15:30372505-30372506 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs12592895 | chr15:30372512-30372513 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs146760384 | chr15:30372517-30372518 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs372260511 | chr15:30372555-30372556 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs572066160 | chr15:30372556-30372557 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs74011040 | chr15:30372571-30372572 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs74011041 | chr15:30372573-30372574 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs192147507 | chr15:30372606-30372607 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs529048556 | chr15:30372612-30372613 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs201720145 | chr15:30372618-30372619 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs71397299 | chr15:30372653-30372654 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs140663819 | chr15:30372697-30372698 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs531009005 | chr15:30372721-30372722 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs550717693 | chr15:30372726-30372727 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs570822494 | chr15:30372727-30372728 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs150115085 | chr15:30372738-30372739 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs185077074 | chr15:30372751-30372752 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs4587953 | chr15:30372763-30372764 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ovarian cancer | 21720365 | CNVD |
HDAC8 | 0 | CNVD |
NIPBL | 0 | CNVD |
RAD21 | 0 | CNVD |
SMC1A | 0 | CNVD |
SMC3 | 0 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Prader-willi syndrome | 21504564 | CNVD |
The inv dup or idic syndrome | 19019226 | CNVD |
Prader-willi syndrome | 21233802 | CNVD |
Angelman syndrome | 16617304 | CNVD |
Angelman syndrome | 20970697 | CNVD |
Autism | 22958593 | CNVD |
Prader-willi syndrome | 16617304 | CNVD |
Prader-willi syndrome | 18923514 | CNVD |
Prader-willi syndrome | 20970697 | CNVD |
Angelman syndrome | 16183798 | CNVD |
Angelman syndrome | 18923514 | CNVD |
Prader-willi syndrome | 22241247 | CNVD |
Epilepsy | 20970697 | CNVD |
Autism | 20970697 | CNVD |
Autism | 19935738 | CNVD |
Autism | 22930557 | CNVD |
Autism | 19966786 | CNVD |
Autism | 18923514 | CNVD |
Autism | 18925931 | CNVD |
Autism | 18835857 | CNVD |
Prader-willi syndrome | 18835857 | CNVD |
Prader-willi syndrome | 22152151 | CNVD |
Autism | 22241247 | CNVD |
15q-syndrome | 21725066 | CNVD |
Prader-willi syndrome | 21503198 | CNVD |
Autism | 21956041 | CNVD |
Prader-willi syndrome | 16760730 | CNVD |
Prader-willi syndrome | 22470819 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
Prader-willi syndrome | 17867985 | CNVD |
Angelman syndrome | 21072004 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Prader-willi syndrome | 18781185 | CNVD |
Melanoma | 18172304 | CNVD |
Autism | 17322880 | CNVD |
Prader-willi syndrome | 19329560 | CNVD |
Autism | 17999366 | CNVD |
Autism | 17901113 | CNVD |
Neurodevelopmental disorder | 17015230 | CNVD |
Autism | 18414403 | CNVD |
Neurocytoma | 17123091 | CNVD |
Mental retardation | 18923513 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Intellectual disability | 22102821 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Breast cancer | 17133270 | CNVD |
Prostate cancer | 16573809 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21785460 | CNVD |
Prostate cancer | 18632612 | CNVD |
Angelman syndrome | 18787571 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Abnormal corpus callosum | 21572526 | CNVD |
idiopathic generalized epilepsy | 19843651 | CNVD |
Autism | 20531469 | CNVD |
Neuropsychiatric disorder | 20506139 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Autism | 19204725 | CNVD |
Schizophrenia | 19204725 | CNVD |
Schizophrenia | 19149910 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Autism | 22543975 | CNVD |
Epilepsy | 22499536 | CNVD |
Schizophrenia | 22499536 | CNVD |
Schizophrenia | 18923514 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 22958593 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Mental retardation | 19951919 | CNVD |
Mental retardation | 21956041 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Mental retardation | 21062444 | CNVD |
Autism | 21269290 | CNVD |
Intellectual disability | 21269290 | CNVD |
Schizophrenia | 21269290 | CNVD |
Colorectal cancer | 21128281 | CNVD |
Epilepsy | 19289393 | CNVD |
Epilepsy | 20643615 | CNVD |
Mental retardation | 19289393 | CNVD |
Mental retardation | 20152051 | CNVD |
Schizophrenia | 19289393 | CNVD |
dysmorphic features | 19289393 | CNVD |
idiopathic epilepsies | 19341504 | CNVD |
idiopathic generalized epilepsy | 19592580 | CNVD |
idiopathic generalized epilepsy | 19136953 | CNVD |
Autism | 22094647 | CNVD |
Developmental delay | 19898479 | CNVD |
Mental retardation | 18278044 | CNVD |
Mental retardation | 19898479 | CNVD |
Prader-willi syndrome | 18854863 | CNVD |
Schizophrenia | 19855392 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Cancer | 20164919 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 20502679 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Intellectual disability | 21811512 | CNVD |
Glioma | 20126413 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:30367600-30372600 | Weak transcription | HSMM | muscle |
2 | chr15:30372600-30372800 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
3 | chr15:30372600-30373000 | Enhancers | HSMM | muscle |
4 | chr15:30372600-30373600 | Enhancers | Muscle Satellite Cultured Cells | -- |
5 | chr15:30372800-30373400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
6 | chr15:30372800-30373600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
7 | chr15:30373200-30373400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
8 | chr15:30373200-30373400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
9 | chr15:30373200-30373400 | Enhancers | HSMMtube | muscle |
10 | chr15:30373200-30373400 | Enhancers | Osteobl | bone |
11 | chr15:30395800-30396000 | Active TSS | HMEC | breast |
12 | chr15:30395800-30396200 | Active TSS | Primary neutrophils fromperipheralblood | blood |
13 | chr15:30395800-30396200 | Active TSS | Primary B cells from peripheral blood | blood |
14 | chr15:30395800-30396200 | Active TSS | Colonic Mucosa | Colon |
15 | chr15:30395800-30396200 | Active TSS | Gastric | stomach |
16 | chr15:30395800-30396400 | Active TSS | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
17 | chr15:30395800-30396400 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
18 | chr15:30395800-30396400 | Active TSS | HUES48 Cell Line | embryonic stem cell |
19 | chr15:30395800-30396400 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
20 | chr15:30395800-30396400 | Active TSS | Muscle Satellite Cultured Cells | -- |
21 | chr15:30395800-30396400 | Active TSS | Cortex derived primary cultured neurospheres | brain |
22 | chr15:30395800-30396400 | Active TSS | Foreskin Fibroblast Primary Cells skin02 | Skin |
23 | chr15:30395800-30396400 | Active TSS | Foreskin Keratinocyte Primary Cells skin02 | Skin |
24 | chr15:30395800-30396400 | Active TSS | Foreskin Keratinocyte Primary Cells skin03 | Skin |
25 | chr15:30395800-30396400 | Active TSS | Adipose Nuclei | Adipose |
26 | chr15:30395800-30396400 | Active TSS | Esophagus | oesophagus |
27 | chr15:30395800-30396400 | Active TSS | Fetal Brain Female | brain |
28 | chr15:30395800-30396400 | Bivalent/Poised TSS | Fetal Stomach | stomach |
29 | chr15:30395800-30396400 | Active TSS | Left Ventricle | heart |
30 | chr15:30395800-30396400 | Active TSS | Rectal Mucosa Donor 31 | rectum |
31 | chr15:30395800-30396400 | Active TSS | Right Atrium | heart |
32 | chr15:30395800-30396400 | Active TSS | Right Ventricle | heart |
33 | chr15:30395800-30396400 | Active TSS | Thymus | Thymus |
34 | chr15:30395800-30396400 | Active TSS | Spleen | Spleen |
35 | chr15:30395800-30396400 | Active TSS | HepG2 | liver |
36 | chr15:30395800-30396400 | Active TSS | Monocytes-CD14+_RO01746 | blood |
37 | chr15:30395800-30396600 | Active TSS | H1 Cell Line | embryonic stem cell |
38 | chr15:30395800-30396600 | Active TSS | HUES6 Cell Line | embryonic stem cell |
39 | chr15:30395800-30396600 | Active TSS | iPS DF 6.9 Cell Line | embryonic stem cell |
40 | chr15:30395800-30396600 | Active TSS | iPS DF 19.11 Cell Line | embryonic stem cell |
41 | chr15:30395800-30396600 | Active TSS | ES-UCSF4 Cell Line | embryonic stem cell |
42 | chr15:30395800-30396600 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
43 | chr15:30395800-30396600 | Active TSS | Ganglion Eminence derived primary cultured neurospheres | brain |
44 | chr15:30395800-30396600 | Active TSS | Foreskin Fibroblast Primary Cells skin01 | Skin |
45 | chr15:30395800-30396600 | Active TSS | Foreskin Melanocyte Primary Cells skin01 | Skin |
46 | chr15:30395800-30396600 | Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
47 | chr15:30395800-30396600 | Active TSS | Pancreas | Pancrea |
48 | chr15:30395800-30396600 | Active TSS | HUVEC | blood vessel |
49 | chr15:30395800-30396800 | Active TSS | HUES64 Cell Line | embryonic stem cell |
50 | chr15:30395800-30396800 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |