Variant report

Variant	esv1823358
Chromosome Location	chr9:136861218-136879961
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:216)
CpG islands
(count:488)
Chromatin interactive
region (count:19)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:216 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:136876031-136876182	HepG2	liver:	n/a	n/a
2	BCL11A	chr9:136879263-136879437	GM12878	blood:	n/a	n/a
3	BCL11A	chr9:136879082-136879526	GM12878	blood:	n/a	n/a
4	BHLHE40	chr9:136869547-136869987	K562	blood:	n/a	chr9:136869715-136869728 chr9:136869957-136869973 chr9:136869906-136869915 chr9:136869716-136869725
5	BHLHE40	chr9:136869721-136869754	GM12878	blood:	n/a	n/a
6	BHLHE40	chr9:136869497-136870038	HepG2	liver:	n/a	chr9:136869715-136869728 chr9:136869957-136869973 chr9:136869906-136869915 chr9:136869716-136869725
7	CBX3	chr9:136879187-136879552	K562	blood:	n/a	n/a
8	CBX3	chr9:136879192-136879515	K562	blood:	n/a	n/a
9	CEBPB	chr9:136862116-136862444	IMR90	lung:	n/a	chr9:136862275-136862286
10	CEBPB	chr9:136862197-136862411	HepG2	liver:	n/a	chr9:136862275-136862286
11	CEBPB	chr9:136864401-136864645	IMR90	lung:	n/a	chr9:136864525-136864536
12	CEBPB	chr9:136862155-136862420	Hela-S3	cervix:	n/a	chr9:136862275-136862286
13	CTCF	chr9:136862440-136862590	HAc	cerebellar:	n/a	n/a
14	CTCF	chr9:136862260-136862410	HBMEC	blood vessel:	n/a	n/a
15	CTCF	chr9:136879367-136879458	GM13976	blood:	n/a	n/a
16	CTCF	chr9:136865200-136865350	HRE	kidney:	n/a	n/a
17	CTCF	chr9:136877633-136877707	Kidney_OC	kidney:	n/a	n/a
18	CTCF	chr9:136865219-136865384	MCF-7	breast:	n/a	n/a
19	CTCF	chr9:136879348-136879441	GM20000	blood:	n/a	n/a
20	CTCF	chr9:136865206-136865298	MCF-7	breast:	n/a	n/a
21	CTCF	chr9:136865200-136865350	HPF	lung:	n/a	n/a
22	CTCF	chr9:136865222-136865278	K562	blood:	n/a	n/a
23	CTCF	chr9:136865140-136865290	GM12875	blood:	n/a	n/a
24	CTCF	chr9:136865140-136865290	MCF-7	breast:	n/a	n/a
25	CTCF	chr9:136865197-136865393	MCF-7	breast:	n/a	n/a
26	CTCF	chr9:136865220-136865370	HA-sp	spinal cord:	n/a	n/a
27	CTCF	chr9:136879332-136879421	GM10248	blood:	n/a	n/a
28	CTCF	chr9:136865207-136865268	K562	blood:	n/a	n/a
29	CTCF	chr9:136862320-136862470	HRPEpiC	eye:	n/a	n/a
30	CTCF	chr9:136865160-136865310	BJ	skin:	n/a	n/a
31	CTCF	chr9:136865180-136865330	AG04450	lung:	n/a	n/a
32	CTCF	chr9:136872872-136872964	GM12892	blood:	n/a	n/a
33	CTCF	chr9:136862400-136862550	GM12864	blood:	n/a	n/a
34	CTCF	chr9:136865280-136865430	GM12872	blood:	n/a	n/a
35	CTCF	chr9:136862360-136862510	GM12864	blood:	n/a	n/a
36	CTCF	chr9:136865126-136865296	HepG2	liver:	n/a	n/a
37	CTCF	chr9:136865300-136865450	NHDF-neo	bronchial:	n/a	n/a
38	CTCF	chr9:136865240-136865390	HBMEC	blood vessel:	n/a	n/a
39	CTCF	chr9:136862220-136862370	GM12872	blood:	n/a	n/a
40	CTCF	chr9:136865180-136865330	HCM	heart:	n/a	n/a
41	CTCF	chr9:136865200-136865350	HAc	cerebellar:	n/a	n/a
42	CTCF	chr9:136865160-136865310	AG10803	skin:	n/a	n/a
43	CTCF	chr9:136870340-136870490	GM12865	blood:	n/a	n/a
44	CTCF	chr9:136868383-136868431	GM20000	blood:	n/a	n/a
45	CTCF	chr9:136879325-136879463	LNCaP	prostate:	n/a	n/a
46	CTCF	chr9:136862240-136862390	NHEK	skin:	n/a	n/a
47	CTCF	chr9:136865260-136865410	WERI-Rb-1	eye:	n/a	n/a
48	CTCF	chr9:136863213-136863299	Kidney_OC	kidney:	n/a	n/a
49	CTCF	chr9:136874080-136874230	AG09309	skin:	n/a	n/a
50	CTCF	chr9:136862360-136862510	AG04450	lung:	n/a	n/a

(count:488 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:136879298-136879348	SAEC	small airway:	n/a
2	chr9:136877010-136877060	NT2-D1	testis:	n/a
3	chr9:136873539-136873589	MCF10A-Er-Src	breast:	n/a
4	chr9:136877010-136877060	IMR90	lung:	fetal
5	chr9:136879298-136879348	NH-A	brain:	n/a
6	chr9:136876366-136876416	AG04449	skin:	fetal
7	chr9:136873539-136873589	NH-A	brain:	n/a
8	chr9:136876905-136876955	SKMC	muscle:	n/a
9	chr9:136876366-136876416	HPAEpiC	pulmonary alveolar:	n/a
10	chr9:136873539-136873589	PrEC	prostate:	n/a
11	chr9:136873539-136873589	A549	lung:	n/a
12	chr9:136876366-136876416	GM12878	blood:	n/a
13	chr9:136869371-136869421	Hepatocyte	liver:	n/a
14	chr9:136879746-136879796	MCF-7	breast:	n/a
15	chr9:136877010-136877060	GM12892	blood:	n/a
16	chr9:136869371-136869421	HRE	kidney:	n/a
17	chr9:136879298-136879348	A549	lung:	n/a
18	chr9:136861819-136861869	SK-N-MC	brain:	n/a
19	chr9:136876905-136876955	MCF10A-Er-Src	breast:	n/a
20	chr9:136869371-136869421	CMK	blood:	n/a
21	chr9:136876905-136876955	GM12891	blood:	n/a
22	chr9:136869371-136869421	HCT-116	colon:	n/a
23	chr9:136876905-136876955	BJ	skin:	n/a
24	chr9:136869371-136869421	HRCEpiC	kidney:	n/a
25	chr9:136876905-136876955	SK-N-SH_RA	brain:	n/a
26	chr9:136869371-136869421	HNPCEpiC	eye:	n/a
27	chr9:136869371-136869421	HAEpiC	amniotic membrane:	n/a
28	chr9:136876366-136876416	BJ	skin:	n/a
29	chr9:136861819-136861869	BJ	skin:	n/a
30	chr9:136876905-136876955	U87	brain:	n/a
31	chr9:136877010-136877060	NH-A	brain:	n/a
32	chr9:136869371-136869421	HCF	heart:	n/a
33	chr9:136877010-136877060	PANC-1	pancreas:	n/a
34	chr9:136879746-136879796	NHBE	bronchial:	n/a
35	chr9:136861819-136861869	PANC-1	pancreas:	n/a
36	chr9:136873539-136873589	HRE	kidney:	n/a
37	chr9:136876366-136876416	HCM	heart:	n/a
38	chr9:136861819-136861869	NHBE	bronchial:	n/a
39	chr9:136879746-136879796	NHDF-neo	bronchial:	n/a
40	chr9:136873539-136873589	HPAEpiC	pulmonary alveolar:	n/a
41	chr9:136876905-136876955	PANC-1	pancreas:	n/a
42	chr9:136877010-136877060	BE2_C	brain:	n/a
43	chr9:136876905-136876955	AoSMC	blood vessel:	n/a
44	chr9:136869371-136869421	HL-60	blood:	n/a
45	chr9:136861819-136861869	NHDF-neo	bronchial:	n/a
46	chr9:136876366-136876416	HEEpiC	esophagus:	n/a
47	chr9:136869371-136869421	ovcar-3	ovarian:	n/a
48	chr9:136873539-136873589	GM19239	blood:	n/a
49	chr9:136876905-136876955	AG10803	skin:	n/a
50	chr9:136861819-136861869	ECC-1	luminal epithelium:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136867977..136869664-chr9:136870201..136872512,2	MCF-7	breast:
2	chr9:136857648..136860079-chr9:136868960..136870875,2	MCF-7	breast:
3	chr9:136856689..136859629-chr9:136860948..136863697,2	K562	blood:
4	chr9:136867977..136869664-chr9:136870201..136872512,2	MCF-7	breast:
5	chr9:136815020..136816601-chr9:136860068..136862429,2	MCF-7	breast:
6	chr9:136741297..136743504-chr9:136863564..136865596,2	MCF-7	breast:
7	chr9:136706030..136708990-chr9:136860281..136862454,2	MCF-7	breast:
8	chr9:136855434..136861951-chr9:136862866..136866695,10	MCF-7	breast:
9	chr9:136856397..136858189-chr9:136860981..136863697,2	K562	blood:
10	chr9:136870803..136872664-chr9:136932233..136934432,2	MCF-7	breast:
11	chr9:136866726..136869330-chr9:136873056..136875890,3	MCF-7	breast:
12	chr9:136873407..136875793-chr9:136883186..136885281,2	MCF-7	breast:
13	chr9:136862110..136863707-chr9:136863725..136867446,4	MCF-7	breast:
14	chr9:136866726..136869330-chr9:136873056..136875890,3	MCF-7	breast:
15	chr9:136868478..136870718-chr9:136870776..136873148,2	K562	blood:
16	chr9:136868478..136870718-chr9:136870776..136873148,2	K562	blood:
17	chr9:136862110..136863707-chr9:136863725..136867446,4	MCF-7	breast:
18	chr9:136858694..136861040-chr9:136863202..136865256,2	MCF-7	breast:
19	chr9:136655644..136657543-chr9:136859054..136861724,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR5-7	chr9:136857728-136861324	NONHSAT135347

No data

Variant related genes	Relation type
VAV2	TF binding region
VAV2	CpG island
ENSG00000169925	chromatin interactions
ENSG00000160293	chromatin interactions

Extended variants
information (count: 955 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:955 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183176627	chr9:136861248-136861249	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
2	rs142140142	chr9:136861271-136861272	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs116833086	chr9:136861319-136861320	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs547935567	chr9:136861345-136861346	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs151233626	chr9:136861356-136861357	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs553392886	chr9:136861360-136861361	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs571804880	chr9:136861426-136861427	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs545521142	chr9:136861443-136861444	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs140387243	chr9:136861478-136861479	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs531548098	chr9:136861487-136861488	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs371264531	chr9:136861525-136861526	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs543321379	chr9:136861555-136861556	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs562015893	chr9:136861608-136861609	Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs106908	chr9:136861609-136861610	Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs369960252	chr9:136861645-136861646	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs548603210	chr9:136861646-136861647	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs566902058	chr9:136861669-136861670	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs147161338	chr9:136861674-136861675	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs187500222	chr9:136861709-136861710	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs552721702	chr9:136861761-136861762	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs570929760	chr9:136861762-136861763	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs150306622	chr9:136861802-136861803	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs191133591	chr9:136861807-136861808	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs568728424	chr9:136861820-136861821	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs535820115	chr9:136861853-136861854	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs553329669	chr9:136861856-136861857	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs571741642	chr9:136861871-136861872	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs116605368	chr9:136861876-136861877	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs183312553	chr9:136861914-136861915	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs576107905	chr9:136861921-136861922	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs115476936	chr9:136861926-136861927	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs561771094	chr9:136861930-136861931	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs529168468	chr9:136861941-136861942	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs137884877	chr9:136862019-136862020	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs572681413	chr9:136862022-136862023	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs556327663	chr9:136862048-136862049	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs541220271	chr9:136862074-136862075	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs140773955	chr9:136862078-136862079	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs144692862	chr9:136862092-136862093	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs557823102	chr9:136862131-136862132	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs2810474	chr9:136862150-136862151	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs188908351	chr9:136862155-136862156	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs192415256	chr9:136862166-136862167	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs543555774	chr9:136862222-136862223	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs138560945	chr9:136862236-136862237	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs142146771	chr9:136862278-136862279	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs184269106	chr9:136862291-136862292	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs114432167	chr9:136862298-136862299	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs576076106	chr9:136862306-136862307	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs143762680	chr9:136862325-136862326	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Cancer	20581869	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Hepatocellular carcinoma	22174799	CNVD
Bladder cancer	21909424	CNVD
Cancer	17160897	CNVD
Ependymoma	20639864	CNVD
Breast cancer	20932292	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Idiopathic chronic pancreatitis	21572526	CNVD
Kleefstra syndrome	22670141	CNVD
Schizophrenia	22241247	CNVD
9q deletion syndrome	16826528	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	19293338	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:135 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136858800-136861600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:136859000-136861600	Weak transcription	Aorta	Aorta
3	chr9:136859600-136864800	Weak transcription	Fetal Lung	lung
4	chr9:136859600-136875400	Weak transcription	Spleen	Spleen
5	chr9:136859800-136862000	Weak transcription	Pancreas	Pancrea
6	chr9:136860000-136862000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:136860000-136864000	Weak transcription	Brain Germinal Matrix	brain
8	chr9:136860200-136864200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:136860200-136865200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:136860400-136862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:136860400-136862800	Weak transcription	Fetal Brain Male	brain
12	chr9:136860400-136864000	Weak transcription	Fetal Brain Female	brain
13	chr9:136860600-136861800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:136860600-136863400	Weak transcription	HSMM	muscle
15	chr9:136861000-136864800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:136861200-136862000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:136861200-136862400	Enhancers	HSMMtube	muscle
18	chr9:136861200-136862800	Enhancers	Fetal Muscle Leg	muscle
19	chr9:136861600-136862200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr9:136861800-136862200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:136862000-136862200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:136862000-136862200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr9:136862000-136862200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:136862000-136862200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:136862000-136862600	Enhancers	Pancreas	Pancrea
26	chr9:136862200-136862800	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:136862200-136868800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:136862400-136864200	Weak transcription	HSMMtube	muscle
29	chr9:136862800-136863000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:136862800-136863000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
31	chr9:136862800-136863000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:136862800-136864000	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:136862800-136864800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:136862800-136865800	Enhancers	Fetal Brain Male	brain
35	chr9:136863000-136863200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:136863000-136863200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
37	chr9:136863400-136863600	Enhancers	HSMM	muscle
38	chr9:136863600-136864000	Weak transcription	HSMM	muscle
39	chr9:136864000-136864800	Enhancers	Fetal Muscle Leg	muscle
40	chr9:136864000-136865400	Enhancers	Fetal Brain Female	brain
41	chr9:136864000-136865600	Enhancers	HSMM	muscle
42	chr9:136864000-136866000	Enhancers	Brain Germinal Matrix	brain
43	chr9:136864200-136864800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:136864200-136864800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr9:136864200-136865600	Enhancers	HSMMtube	muscle
46	chr9:136864400-136865400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:136864400-136865600	Enhancers	Fetal Stomach	stomach
48	chr9:136864600-136865000	Enhancers	NH-A	brain
49	chr9:136864800-136865000	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr9:136864800-136865200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links