Variant report

Variant	esv1823529
Chromosome Location	chr9:136850906-136863033
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1475)
CpG islands
(count:673)
Chromatin interactive
region (count:62)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1475 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:136859562-136859782	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:136856048-136856079	HepG2	liver:	n/a	n/a
3	BACH1	chr9:136856855-136856872	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr9:136857281-136858367	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr9:136858165-136858241	K562	blood:	n/a	n/a
6	BACH1	chr9:136856324-136856351	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL3	chr9:136857104-136857688	GM12878	blood:	n/a	chr9:136857527-136857540 chr9:136857667-136857680 chr9:136857587-136857600
8	BCL3	chr9:136857966-136858629	A549	lung:	n/a	chr9:136858041-136858050 chr9:136858023-136858032 chr9:136858029-136858038
9	BCLAF1	chr9:136857949-136858391	GM12878	blood:	n/a	chr9:136858041-136858050 chr9:136858023-136858032 chr9:136858029-136858038
10	BCLAF1	chr9:136857182-136857925	GM12878	blood:	n/a	chr9:136857527-136857540 chr9:136857722-136857735 chr9:136857667-136857680 chr9:136857587-136857600 chr9:136857703-136857716
11	BHLHE40	chr9:136857536-136857643	K562	blood:	n/a	n/a
12	BHLHE40	chr9:136859537-136859868	GM12878	blood:	n/a	n/a
13	BHLHE40	chr9:136858375-136858412	K562	blood:	n/a	n/a
14	BHLHE40	chr9:136857175-136857795	GM12878	blood:	n/a	chr9:136857723-136857739
15	BHLHE40	chr9:136858022-136858718	GM12878	blood:	n/a	chr9:136858292-136858308
16	BHLHE40	chr9:136857238-136857657	HepG2	liver:	n/a	n/a
17	BHLHE40	chr9:136856410-136856656	GM12878	blood:	n/a	n/a
18	BHLHE40	chr9:136859506-136859800	K562	blood:	n/a	n/a
19	BRCA1	chr9:136856472-136856482	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr9:136857229-136857386	Hela-S3	cervix:	n/a	n/a
21	BRCA1	chr9:136859571-136859661	HepG2	liver:	n/a	n/a
22	BRCA1	chr9:136859495-136859859	Hela-S3	cervix:	n/a	n/a
23	BRCA1	chr9:136858624-136858795	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr9:136859697-136859701	GM12878	blood:	n/a	n/a
25	CCNT2	chr9:136857387-136858522	K562	blood:	n/a	chr9:136858030-136858039 chr9:136858444-136858453
26	CEBPB	chr9:136858175-136858310	H1-hESC	embryonic stem cell:	n/a	n/a
27	CEBPB	chr9:136858552-136858776	HepG2	liver:	n/a	n/a
28	CEBPB	chr9:136856519-136856548	HepG2	liver:	n/a	n/a
29	CEBPB	chr9:136859569-136859830	H1-hESC	embryonic stem cell:	n/a	n/a
30	CEBPB	chr9:136852347-136852415	HepG2	liver:	n/a	n/a
31	CEBPB	chr9:136858000-136858845	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr9:136862155-136862420	Hela-S3	cervix:	n/a	chr9:136862275-136862286
33	CEBPB	chr9:136858693-136858716	K562	blood:	n/a	n/a
34	CEBPB	chr9:136862197-136862411	HepG2	liver:	n/a	chr9:136862275-136862286
35	CEBPB	chr9:136862116-136862444	IMR90	lung:	n/a	chr9:136862275-136862286
36	CEBPB	chr9:136857190-136857515	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr9:136856033-136856632	Hela-S3	cervix:	n/a	n/a
38	CEBPB	chr9:136856052-136856100	HepG2	liver:	n/a	n/a
39	CEBPB	chr9:136859558-136859784	Hela-S3	cervix:	n/a	n/a
40	CEBPD	chr9:136858491-136858779	HepG2	liver:	n/a	n/a
41	CEBPD	chr9:136857224-136858245	HepG2	liver:	n/a	n/a
42	CHD1	chr9:136859440-136860013	IMR90	lung:	n/a	n/a
43	CHD1	chr9:136856298-136856917	GM12878	blood:	n/a	n/a
44	CHD1	chr9:136854949-136855189	GM12878	blood:	n/a	n/a
45	CHD1	chr9:136858037-136858270	GM12878	blood:	n/a	n/a
46	CHD1	chr9:136856264-136856393	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD1	chr9:136859517-136859839	GM12878	blood:	n/a	n/a
48	CHD1	chr9:136857138-136857719	GM12878	blood:	n/a	n/a
49	CHD2	chr9:136857297-136857649	GM12878	blood:	n/a	n/a
50	CHD2	chr9:136859551-136859813	HepG2	liver:	n/a	n/a

(count:673 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:136860187-136860237	AG10803	skin:	n/a
2	chr9:136858163-136858213	BE2_C	brain:	n/a
3	chr9:136860187-136860237	AG10803	skin:	n/a
4	chr9:136858163-136858213	BE2_C	brain:	n/a
5	chr9:136857190-136857240	CMK	blood:	n/a
6	chr9:136856352-136856402	SK-N-SH_RA	brain:	n/a
7	chr9:136856352-136856402	LNCaP	prostate:	n/a
8	chr9:136860187-136860237	A549	lung:	n/a
9	chr9:136860187-136860237	NHDF-neo	bronchial:	n/a
10	chr9:136858308-136858358	HPAEpiC	pulmonary alveolar:	n/a
11	chr9:136857190-136857240	HIPEpiC	eye:	n/a
12	chr9:136855902-136855952	Hepatocyte	liver:	n/a
13	chr9:136857244-136857294	AG04449	skin:	fetal
14	chr9:136857244-136857294	SK-N-SH	brain:	n/a
15	chr9:136861819-136861869	Caco-2	colon:	n/a
16	chr9:136858163-136858213	BJ	skin:	n/a
17	chr9:136858308-136858358	LNCaP	prostate:	n/a
18	chr9:136860187-136860237	ECC-1	luminal epithelium:	n/a
19	chr9:136855902-136855952	Caco-2	colon:	n/a
20	chr9:136860187-136860237	HL-60	blood:	n/a
21	chr9:136858308-136858358	GM12891	blood:	n/a
22	chr9:136856435-136856485	HepG2	liver:	n/a
23	chr9:136856435-136856485	NHBE	bronchial:	n/a
24	chr9:136855902-136855952	A549	lung:	n/a
25	chr9:136856435-136856485	PANC-1	pancreas:	n/a
26	chr9:136858673-136858723	BJ	skin:	n/a
27	chr9:136855902-136855952	SK-N-MC	brain:	n/a
28	chr9:136860187-136860237	PrEC	prostate:	n/a
29	chr9:136857244-136857294	HRPEpiC	eye:	n/a
30	chr9:136858673-136858723	HCF	heart:	n/a
31	chr9:136860187-136860237	Caco-2	colon:	n/a
32	chr9:136856352-136856402	HNPCEpiC	eye:	n/a
33	chr9:136856435-136856485	HAEpiC	amniotic membrane:	n/a
34	chr9:136855902-136855952	H1-hESC	embryonic stem cell:	embryo
35	chr9:136860187-136860237	MCF-7	breast:	n/a
36	chr9:136858680-136858730	LNCaP	prostate:	n/a
37	chr9:136860187-136860237	HPAEpiC	pulmonary alveolar:	n/a
38	chr9:136858673-136858723	H1-hESC	embryonic stem cell:	embryo
39	chr9:136855902-136855952	AG04449	skin:	fetal
40	chr9:136857244-136857294	HIPEpiC	eye:	n/a
41	chr9:136858163-136858213	HEK293	kidney:	embryo
42	chr9:136855902-136855952	AG04450	lung:	fetal
43	chr9:136858673-136858723	ProgFib	skin:	n/a
44	chr9:136858308-136858358	GM06990	blood:	n/a
45	chr9:136860187-136860237	NH-A	brain:	n/a
46	chr9:136857190-136857240	HUVEC	blood vessel:	n/a
47	chr9:136855902-136855952	SK-N-SH_RA	brain:	n/a
48	chr9:136857244-136857294	HCT-116	colon:	n/a
49	chr9:136858308-136858358	AoSMC	blood vessel:	n/a
50	chr9:136855902-136855952	HPAEpiC	pulmonary alveolar:	n/a

(count:62 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr9:136679694..136681677-chr9:136851207..136853977,2	MCF-7	breast:
2	chr9:136856335..136860882-chr9:136888369..136892368,8	MCF-7	breast:
3	chr9:136849949..136852879-chr9:136857069..136859221,2	K562	blood:
4	chr9:136662303..136663068-chr9:136859673..136860648,2	MCF-7	breast:
5	chr17:7387387..7388059-chr9:136856964..136857786,2	Hela-S3	cervix:
6	chr9:136217971..136219533-chr9:136857799..136859450,2	MCF-7	breast:
7	chr9:136656846..136660173-chr9:136849456..136851758,3	MCF-7	breast:
8	chr9:136592463..136593107-chr9:136859236..136860141,3	MCF-7	breast:
9	chr9:136655962..136656512-chr9:136858875..136859685,2	K562	blood:
10	chr9:136657819..136658763-chr9:136858806..136859951,5	MCF-7	breast:
11	chr9:136856689..136859629-chr9:136860948..136863697,2	K562	blood:
12	chr9:136802379..136804423-chr9:136852709..136855178,2	MCF-7	breast:
13	chr9:136746415..136748463-chr9:136851208..136853267,2	MCF-7	breast:
14	chr9:136600335..136600989-chr9:136859268..136860138,2	MCF-7	breast:
15	chr9:136751034..136753056-chr9:136851311..136853643,2	MCF-7	breast:
16	chr9:136647007..136648956-chr9:136858795..136860235,12	MCF-7	breast:
17	chr9:136607827..136608773-chr9:136859602..136860351,4	MCF-7	breast:
18	chr9:136747429..136748291-chr9:136859497..136860075,2	MCF-7	breast:
19	chr9:136607693..136608878-chr9:136859235..136860612,8	MCF-7	breast:
20	chr9:136647409..136647939-chr9:136859642..136860182,3	K562	blood:
21	chr9:136657888..136659088-chr9:136857891..136858693,4	MCF-7	breast:
22	chr9:136646919..136648935-chr9:136858713..136860466,10	MCF-7	breast:
23	chr9:136594711..136597550-chr9:136858767..136860355,2	MCF-7	breast:
24	chr9:136657461..136661655-chr9:136857893..136859866,4	K562	blood:
25	chr17:41465782..41466571-chr9:136857818..136858531,2	Hela-S3	cervix:
26	chr9:136738035..136740400-chr9:136850110..136852807,2	MCF-7	breast:
27	chr9:136657511..136659120-chr9:136859180..136860603,16	MCF-7	breast:
28	chr9:136667141..136668984-chr9:136855421..136857150,2	MCF-7	breast:
29	chr22:43010797..43011769-chr9:136856743..136857657,2	Hela-S3	cervix:
30	chr20:48329316..48329843-chr9:136855861..136856467,2	Hela-S3	cervix:
31	chr9:136855194..136860597-chr9:136929703..136933650,7	MCF-7	breast:
32	chr9:136839997..136844319-chr9:136851053..136854251,5	MCF-7	breast:
33	chr9:136855434..136861951-chr9:136862866..136866695,10	MCF-7	breast:
34	chr9:136857193..136859735-chr9:136888278..136891342,4	MCF-7	breast:
35	chr9:136647156..136647722-chr9:136857760..136858312,2	MCF-7	breast:
36	chr9:136819042..136820561-chr9:136859120..136860817,2	MCF-7	breast:
37	chr9:136858694..136861040-chr9:136863202..136865256,2	MCF-7	breast:
38	chr9:136592345..136593069-chr9:136859637..136860159,2	MCF-7	breast:
39	chr9:136608029..136608531-chr9:136858192..136859169,2	MCF-7	breast:
40	chr9:136859431..136860674-chr9:136964030..136964900,5	MCF-7	breast:
41	chr9:136655644..136657543-chr9:136859054..136861724,2	K562	blood:
42	chr9:136862110..136863707-chr9:136863725..136867446,4	MCF-7	breast:
43	chr9:136657265..136659232-chr9:136854243..136855846,2	K562	blood:
44	chr9:136815020..136816601-chr9:136860068..136862429,2	MCF-7	breast:
45	chr9:136706030..136708990-chr9:136860281..136862454,2	MCF-7	breast:
46	chr9:136858439..136860470-chr9:136963479..136965806,2	MCF-7	breast:
47	chr9:136625089..136627399-chr9:136858004..136860328,2	MCF-7	breast:
48	chr9:136591900..136594207-chr9:136858637..136860236,2	MCF-7	breast:
49	chr1:16678857..16679483-chr9:136857773..136858655,2	Hela-S3	cervix:
50	chr17:58677435..58680394-chr9:136857896..136860386,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR5-7	chr9:136857728-136861324	NONHSAT135347

No data

Variant related genes	Relation type
VAV2	TF binding region
VAV2	CpG island
ENSG00000136450	chromatin interactions
ENSG00000235106	chromatin interactions
ENSG00000181222	chromatin interactions
ENSG00000270022	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000037637	chromatin interactions
ENSG00000160293	chromatin interactions
ENSG00000174282	chromatin interactions
ENSG00000100227	chromatin interactions
ENSG00000055070	chromatin interactions
ENSG00000123453	chromatin interactions
ENSG00000169925	chromatin interactions
ENSG00000170836	chromatin interactions

Extended variants
information (count: 482 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:482 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12001501	chr9:136850906-136850907	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
2	rs531898945	chr9:136850909-136850910	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs150435236	chr9:136850923-136850924	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs76164288	chr9:136850924-136850925	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs145229464	chr9:136850957-136850958	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs189785851	chr9:136850974-136850975	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs551630967	chr9:136851000-136851001	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs148879555	chr9:136851052-136851053	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs116131294	chr9:136851120-136851121	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs554930264	chr9:136851134-136851135	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs573335836	chr9:136851210-136851211	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs80092190	chr9:136851225-136851226	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs77901135	chr9:136851240-136851241	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs431791	chr9:136851274-136851275	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs545199108	chr9:136851369-136851370	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs10120683	chr9:136851376-136851377	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs421771	chr9:136851395-136851396	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs368461632	chr9:136851398-136851399	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs370641	chr9:136851399-136851400	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs562050919	chr9:136851408-136851409	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs529318350	chr9:136851422-136851423	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs547548061	chr9:136851490-136851491	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs554026817	chr9:136851507-136851508	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs566182681	chr9:136851524-136851525	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs182114101	chr9:136851563-136851564	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs551555750	chr9:136851577-136851578	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs146971555	chr9:136851590-136851591	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs7031569	chr9:136851635-136851636	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs555667910	chr9:136851650-136851651	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs567122279	chr9:136851691-136851692	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs571535032	chr9:136851695-136851696	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs552751760	chr9:136851711-136851712	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs376989037	chr9:136851750-136851751	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs420897	chr9:136851763-136851764	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs111568647	chr9:136851775-136851776	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs201488071	chr9:136851825-136851826	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs7031860	chr9:136851833-136851834	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs73662365	chr9:136851840-136851841	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs117688307	chr9:136851850-136851851	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs72764880	chr9:136851906-136851907	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs187034601	chr9:136851971-136851972	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs372976541	chr9:136851975-136851976	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs192562556	chr9:136852019-136852020	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs541427344	chr9:136852075-136852076	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs429461	chr9:136852092-136852093	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs62577872	chr9:136852093-136852094	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs71505244	chr9:136852110-136852111	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs533783926	chr9:136852136-136852137	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs145797940	chr9:136852158-136852159	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs71503368	chr9:136852169-136852170	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Melanoma	18172304	CNVD
Cervical cancer	16585170	CNVD
Ependymoma	19289631	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Kleefstra Syndrome	21538692	CNVD
Disorders of sex development	22290220	CNVD
Cancer	21183584	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Abnormal phenotypes	18644119	CNVD
Ovarian cancer	21720365	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21364760	CNVD
Cancer	20581869	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Hepatocellular carcinoma	22174799	CNVD
Bladder cancer	21909424	CNVD
Cancer	17160897	CNVD
Ependymoma	20639864	CNVD
Breast cancer	20932292	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Idiopathic chronic pancreatitis	21572526	CNVD
Kleefstra syndrome	22670141	CNVD
Schizophrenia	22241247	CNVD
9q deletion syndrome	16826528	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Non-small cell lung cancer	21829676	CNVD
Non-syndromic sensorineural hearing loss	19293338	CNVD
Neurodevelopmental disorder	22521361	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:868 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136835800-136854800	Weak transcription	A549	lung
2	chr9:136837400-136851400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:136837400-136854800	Weak transcription	HMEC	breast
4	chr9:136838000-136854800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:136840000-136854800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:136840400-136854800	Weak transcription	Hela-S3	cervix
7	chr9:136840800-136852600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:136844200-136855800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:136844200-136856000	Weak transcription	Small Intestine	intestine
10	chr9:136845200-136855000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:136845400-136855000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:136845600-136851000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:136845600-136854800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr9:136845600-136855000	Weak transcription	NHDF-Ad	bronchial
15	chr9:136845800-136854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:136845800-136855000	Weak transcription	Esophagus	oesophagus
17	chr9:136845800-136855000	Weak transcription	NHLF	lung
18	chr9:136845800-136855400	Weak transcription	Right Atrium	heart
19	chr9:136845800-136855400	Weak transcription	Osteobl	bone
20	chr9:136845800-136855600	Weak transcription	HSMMtube	muscle
21	chr9:136846000-136855800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:136846200-136854800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:136846200-136855600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:136846400-136855000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:136846400-136856000	Weak transcription	Fetal Kidney	kidney
26	chr9:136846800-136855400	Weak transcription	Right Ventricle	heart
27	chr9:136847000-136855000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:136847000-136855200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:136847000-136855200	Weak transcription	HSMM	muscle
30	chr9:136847400-136852800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:136847400-136854800	Weak transcription	Lung	lung
32	chr9:136847400-136855000	Weak transcription	Spleen	Spleen
33	chr9:136847600-136851200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:136847600-136852400	Weak transcription	Brain Germinal Matrix	brain
35	chr9:136847600-136854800	Weak transcription	Liver	Liver
36	chr9:136847600-136855400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:136847800-136851800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:136847800-136853200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:136847800-136855000	Weak transcription	Colonic Mucosa	Colon
40	chr9:136847800-136855400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:136848400-136851200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr9:136848400-136851200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr9:136848400-136851200	Weak transcription	Fetal Brain Male	brain
44	chr9:136848400-136853200	Weak transcription	Fetal Lung	lung
45	chr9:136848400-136855400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:136848600-136851000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:136848600-136851000	Weak transcription	Primary B cells from cord blood	blood
48	chr9:136848600-136852400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr9:136848600-136855000	Weak transcription	Fetal Muscle Leg	muscle
50	chr9:136848800-136851200	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links