Variant report

Variant	esv1824366
Chromosome Location	chr7:63830306-63843265
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
2	lnc-ZNF736-1	chr7:63831907-63831978	XLOC_006123
3	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
4	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
5	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124
6	lnc-ZNF736-1	chr7:63832148-63832189	XLOC_006123
7	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123

Variant related genes	Relation type
CDX2	miRNA target sites
CDV3	miRNA target sites
RAB5C	miRNA target sites

Extended variants
information (count: 160 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:160 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544728959	chr7:63830315-63830316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs564593726	chr7:63830384-63830385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs34357809	chr7:63830538-63830539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs56133860	chr7:63830539-63830540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs398004942	chr7:63830552-63830553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187351709	chr7:63830590-63830591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190750854	chr7:63830618-63830619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs71060595	chr7:63830659-63830660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201445907	chr7:63830666-63830667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs684798	chr7:63830695-63830696	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs182952356	chr7:63830718-63830719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546836448	chr7:63830719-63830720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566692605	chr7:63830720-63830721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538791566	chr7:63830722-63830723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11763505	chr7:63830725-63830726	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs569414757	chr7:63830732-63830733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs538332002	chr7:63830749-63830750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs554695910	chr7:63830766-63830767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185672857	chr7:63830769-63830770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs796545	chr7:63830806-63830807	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs554018615	chr7:63830818-63830819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs577029112	chr7:63830858-63830859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190130872	chr7:63830859-63830860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4448144	chr7:63830876-63830877	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs4582437	chr7:63830879-63830880	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs183227590	chr7:63830892-63830893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs560734225	chr7:63830895-63830896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188188012	chr7:63830900-63830901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs1815150	chr7:63830932-63830933	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs144612474	chr7:63830952-63830953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs10256682	chr7:63831027-63831028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs35505205	chr7:63831192-63831193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552445748	chr7:63831406-63831407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373375315	chr7:63831463-63831464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs374760844	chr7:63831468-63831469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs559669248	chr7:63831473-63831474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527402552	chr7:63831474-63831475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569052987	chr7:63831505-63831506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531748456	chr7:63831532-63831533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192466653	chr7:63831550-63831551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568384749	chr7:63831573-63831574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs534153662	chr7:63831579-63831580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs114355497	chr7:63831680-63831681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs182682259	chr7:63831698-63831699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11979331	chr7:63831729-63831730	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs17139091	chr7:63831731-63831732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs536209414	chr7:63831750-63831751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148395378	chr7:63831812-63831813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543991265	chr7:63831835-63831836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs527308129	chr7:63831867-63831868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart

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