Variant report

Variant	esv1824752
Chromosome Location	chr6:161031827-161072190
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-2	chr6:161041576-161041654	NONHSAT115908
2	lnc-PLG-2	chr6:161039310-161039522	NONHSAT115908

Extended variants
information (count: 651 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:651 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568953063	chr6:161031834-161031835	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs190800884	chr6:161031836-161031837	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370186443	chr6:161031838-161031839	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs534217838	chr6:161031864-161031865	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554554813	chr6:161031869-161031870	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577617615	chr6:161031879-161031880	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539806373	chr6:161031890-161031891	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9355815	chr6:161031894-161031895	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs373322376	chr6:161031896-161031897	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs576431701	chr6:161031897-161031898	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs542339070	chr6:161031918-161031919	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs568386876	chr6:161031919-161031920	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557439390	chr6:161031943-161031944	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560915420	chr6:161031947-161031948	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540041052	chr6:161031951-161031952	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559976010	chr6:161031959-161031960	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs532286344	chr6:161031991-161031992	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs146285881	chr6:161032017-161032018	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562170561	chr6:161032023-161032024	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs11961303	chr6:161032024-161032025	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577466308	chr6:161032031-161032032	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs185421391	chr6:161032036-161032037	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568560858	chr6:161032056-161032057	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs527842070	chr6:161032057-161032058	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546136409	chr6:161032061-161032062	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553241833	chr6:161032083-161032084	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs6929299	chr6:161032089-161032090	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs571124776	chr6:161032092-161032093	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535253475	chr6:161032103-161032104	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs540158762	chr6:161032108-161032109	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189732847	chr6:161032112-161032113	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570068397	chr6:161032114-161032115	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139081002	chr6:161032119-161032120	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369605687	chr6:161032121-161032122	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs370322409	chr6:161032128-161032129	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs372995194	chr6:161032147-161032148	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs144005062	chr6:161032149-161032150	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs181324259	chr6:161032179-161032180	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185536918	chr6:161032182-161032183	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs553568989	chr6:161032195-161032196	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs191582391	chr6:161032196-161032197	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs545723667	chr6:161032199-161032200	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs535817079	chr6:161032200-161032201	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531384954	chr6:161032202-161032203	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541466594	chr6:161032212-161032213	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561879325	chr6:161032224-161032225	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs73596849	chr6:161032225-161032226	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs547981776	chr6:161032226-161032227	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530876298	chr6:161032228-161032229	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576107086	chr6:161032230-161032231	Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Carotid artery disease	21127300	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160990600-161032600	Strong transcription	Liver	Liver
2	chr6:161031800-161032000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:161032000-161032600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:161032600-161034200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:161032600-161034400	Weak transcription	Liver	Liver
6	chr6:161055600-161056000	Active TSS	Fetal Heart	heart
7	chr6:161055600-161056000	ZNF genes & repeats	Stomach Mucosa	stomach
8	chr6:161055600-161056200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
9	chr6:161055800-161056000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
10	chr6:161055800-161056000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:161055800-161056000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:161055800-161056000	ZNF genes & repeats	Fetal Brain Male	brain
13	chr6:161055800-161056200	ZNF genes & repeats	Fetal Stomach	stomach
14	chr6:161056200-161069400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:161063400-161067800	Weak transcription	Liver	Liver
16	chr6:161067800-161072400	Strong transcription	Liver	Liver
17	chr6:161069400-161069800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
18	chr6:161069800-161071600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:161071600-161077000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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