Variant report

Variant	esv1825232
Chromosome Location	chr11:25750628-25779039
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:25758683-25759020	HepG2	liver:	n/a	n/a
2	ATF1	chr11:25756688-25756790	K562	blood:	n/a	n/a
3	BRCA1	chr11:25766627-25766768	Hela-S3	cervix:	n/a	n/a
4	CEBPB	chr11:25767185-25767645	A549	lung:	n/a	n/a
5	CEBPB	chr11:25760324-25760536	HepG2	liver:	n/a	chr11:25760460-25760471
6	CEBPB	chr11:25767068-25767839	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr11:25760351-25760543	A549	lung:	n/a	chr11:25760460-25760471
8	CEBPB	chr11:25767438-25767649	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr11:25767482-25767804	ECC-1	luminal epithelium:	n/a	n/a
10	CEBPB	chr11:25767508-25767814	MCF-7	breast:	n/a	n/a
11	CEBPB	chr11:25767143-25767521	HepG2	liver:	n/a	n/a
12	CEBPB	chr11:25767206-25767744	IMR90	lung:	n/a	n/a
13	CEBPB	chr11:25756183-25756490	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr11:25760363-25760551	K562	blood:	n/a	chr11:25760460-25760471
15	CEBPB	chr11:25755348-25755781	Hela-S3	cervix:	n/a	chr11:25755487-25755500
16	CHD1	chr11:25756180-25756251	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr11:25756321-25756367	GM10266	blood:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
18	CTCF	chr11:25755380-25755530	SK-N-SH_RA	brain:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
19	CTCF	chr11:25756240-25756390	SAEC	small airway:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
20	CTCF	chr11:25756260-25756410	HRPEpiC	eye:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
21	CTCF	chr11:25756240-25756390	HBMEC	blood vessel:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
22	CTCF	chr11:25756180-25756330	HAc	cerebellar:	n/a	n/a
23	CTCF	chr11:25756220-25756370	HPAF	blood vessel:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
24	CTCF	chr11:25755416-25755570	HepG2	liver:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
25	CTCF	chr11:25756260-25756410	AG09319	gingival:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
26	CTCF	chr11:25756198-25756522	H1-hESC	embryonic stem cell:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
27	CTCF	chr11:25755469-25755601	Pancreas_OC	pancreas:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
28	CTCF	chr11:25756240-25756390	HMEC	breast:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
29	CTCF	chr11:25755436-25755588	Kidney_OC	kidney:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
30	CTCF	chr11:25755420-25755570	Hela-S3	cervix:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
31	CTCF	chr11:25755420-25755570	AG04450	lung:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
32	CTCF	chr11:25756286-25756374	NHEK	skin:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
33	CTCF	chr11:25756220-25756370	GM12874	blood:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
34	CTCF	chr11:25755480-25755630	HEEpiC	esophagus:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
35	CTCF	chr11:25756260-25756410	Hela-S3	cervix:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
36	CTCF	chr11:25755380-25755530	HCFaa	heart:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
37	CTCF	chr11:25755448-25755547	GM12878	blood:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
38	CTCF	chr11:25756280-25756430	GM12865	blood:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
39	CTCF	chr11:25755397-25755548	SK-N-SH_RA	brain:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
40	CTCF	chr11:25755420-25755570	AoAF	blood vessel:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
41	CTCF	chr11:25755420-25755570	HA-sp	spinal cord:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
42	CTCF	chr11:25755440-25755590	HMEC	breast:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
43	CTCF	chr11:25755440-25755590	RPTEC	kidney:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
44	CTCF	chr11:25755420-25755570	HRPEpiC	eye:	n/a	chr11:25755493-25755514 chr11:25755498-25755516
45	CTCF	chr11:25756125-25756477	MCF-7	breast:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
46	CTCF	chr11:25756260-25756410	HMF	breast:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
47	CTCF	chr11:25756260-25756410	HPAF	blood vessel:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
48	CTCF	chr11:25756240-25756390	SK-N-SH_RA	brain:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
49	CTCF	chr11:25756280-25756430	HRPEpiC	eye:	n/a	chr11:25756332-25756353 chr11:25756338-25756354 chr11:25756337-25756355
50	CTCF	chr11:25755308-25755732	MCF-7	breast:	n/a	chr11:25755493-25755514 chr11:25755498-25755516

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:24801274..24801786-chr11:25755056..25755745,2	MCF-7	breast:
2	chr11:24802835..24803539-chr11:25755478..25755981,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-3	chr11:25756356-25756416	ENSG00000254456
2	lnc-ANO3-3	chr11:25762023-25762107	ENSG00000254456
3	lnc-ANO3-3	chr11:25762023-25762107	ENSG00000254456
4	lnc-ANO3-3	chr11:25756317-25756416	ENSG00000254456
5	lnc-ANO3-3	chr11:25756317-25756416	ENSG00000254456
6	lnc-ANO3-3	chr11:25756317-25756416	NONHSAT018451
7	lnc-ANO3-3	chr11:25762023-25762107	NONHSAT018451

Variant related genes	Relation type
ENSG00000254456	TF binding region

Extended variants
information (count: 541 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:541 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7935482	chr11:25750628-25750629	Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs373832666	chr11:25750654-25750655	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs386751819	chr11:25750655-25750656	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs186396268	chr11:25750656-25750657	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs139560533	chr11:25750658-25750659	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs61740109	chr11:25750699-25750700	Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs541682569	chr11:25750724-25750725	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs61754883	chr11:25750725-25750726	Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs529332079	chr11:25750733-25750734	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs61738902	chr11:25750745-25750746	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs7935615	chr11:25750746-25750747	Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs183327929	chr11:25750751-25750752	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs7935620	chr11:25750775-25750776	Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs373477026	chr11:25751202-25751203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs141879040	chr11:25751253-25751254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs529384202	chr11:25751259-25751260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs549106847	chr11:25751275-25751276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs569157386	chr11:25751288-25751289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539736581	chr11:25751307-25751308	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs551748526	chr11:25751310-25751311	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7938971	chr11:25751372-25751373	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs534295021	chr11:25751492-25751493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7939196	chr11:25751503-25751504	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs145556057	chr11:25751524-25751525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs535591642	chr11:25751545-25751546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs557183410	chr11:25751579-25751580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs191019843	chr11:25751598-25751599	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs7939236	chr11:25751647-25751648	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs564195391	chr11:25751648-25751649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs137903351	chr11:25751653-25751654	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs4144751	chr11:25751687-25751688	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs576306568	chr11:25751695-25751696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs562143513	chr11:25751697-25751698	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs529345616	chr11:25751721-25751722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs555055695	chr11:25751737-25751738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs550704344	chr11:25751749-25751750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs375123366	chr11:25751757-25751758	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs533305142	chr11:25751773-25751774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs4144750	chr11:25751782-25751783	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs11028879	chr11:25751791-25751792	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs534542973	chr11:25751839-25751840	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs142360202	chr11:25751840-25751841	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs371175174	chr11:25751888-25751889	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs386751820	chr11:25751898-25751899	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs11028881	chr11:25751900-25751901	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs557046899	chr11:25751904-25751905	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs546898846	chr11:25751910-25751911	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs115644376	chr11:25751923-25751924	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs567103687	chr11:25751979-25751980	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs4923298	chr11:25752000-25752001	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25750600-25750800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:25750600-25750800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:25750600-25750800	ZNF genes & repeats	Pancreas	Pancrea
4	chr11:25751200-25751800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:25752600-25755000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:25755000-25756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:25755600-25756800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:25756600-25756800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:25756600-25757000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:25757800-25759800	Enhancers	HepG2	liver
11	chr11:25758800-25759000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:25767000-25767400	Enhancers	Hela-S3	cervix
13	chr11:25767400-25767800	Active TSS	Hela-S3	cervix
14	chr11:25773800-25774800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:25774800-25775200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:25777400-25778000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:25777400-25778200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:25777600-25778000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:25778000-25779600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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