Variant report

Variant	esv1825236
Chromosome Location	chr6:31458277-31476322
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1399)
CpG islands
(count:6546)
Chromatin interactive
region (count:69)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1399 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:31459619-31459922	K562	blood:	n/a	n/a
2	ARID3A	chr6:31461668-31461788	K562	blood:	n/a	n/a
3	ARID3A	chr6:31461644-31461844	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:31465722-31465982	K562	blood:	n/a	n/a
5	ATF1	chr6:31461574-31461862	K562	blood:	n/a	n/a
6	ATF1	chr6:31458353-31458537	K562	blood:	n/a	n/a
7	ATF1	chr6:31459738-31459959	K562	blood:	n/a	n/a
8	ATF3	chr6:31459688-31460033	A549	lung:	n/a	n/a
9	BACH1	chr6:31465477-31465659	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr6:31461976-31462261	H1-hESC	embryonic stem cell:	n/a	n/a
11	BATF	chr6:31461631-31461827	GM12878	blood:	n/a	n/a
12	BCLAF1	chr6:31459573-31460031	GM12878	blood:	n/a	n/a
13	BCLAF1	chr6:31462354-31462696	GM12878	blood:	n/a	n/a
14	BCLAF1	chr6:31461456-31461937	GM12878	blood:	n/a	n/a
15	BHLHE40	chr6:31461591-31461803	HepG2	liver:	n/a	n/a
16	BHLHE40	chr6:31465570-31466076	K562	blood:	n/a	n/a
17	BHLHE40	chr6:31458219-31458709	K562	blood:	n/a	n/a
18	BHLHE40	chr6:31459788-31459955	GM12878	blood:	n/a	n/a
19	BHLHE40	chr6:31461588-31461787	GM12878	blood:	n/a	n/a
20	BHLHE40	chr6:31465586-31465724	A549	lung:	n/a	n/a
21	BHLHE40	chr6:31459742-31459942	K562	blood:	n/a	n/a
22	BHLHE40	chr6:31465368-31466094	GM12878	blood:	n/a	n/a
23	BHLHE40	chr6:31461660-31461764	K562	blood:	n/a	n/a
24	BHLHE40	chr6:31465521-31465739	HepG2	liver:	n/a	n/a
25	BHLHE40	chr6:31462613-31462825	GM12878	blood:	n/a	n/a
26	BRCA1	chr6:31459755-31459971	Hela-S3	cervix:	n/a	n/a
27	BRCA1	chr6:31461666-31461793	H1-hESC	embryonic stem cell:	n/a	n/a
28	BRCA1	chr6:31459775-31459832	GM12878	blood:	n/a	n/a
29	BRCA1	chr6:31462911-31462931	GM12878	blood:	n/a	n/a
30	BRCA1	chr6:31461543-31461805	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr6:31465589-31465728	GM12878	blood:	n/a	n/a
32	CBX3	chr6:31459569-31460149	K562	blood:	n/a	n/a
33	CBX3	chr6:31462512-31463057	K562	blood:	n/a	n/a
34	CBX3	chr6:31458137-31458724	K562	blood:	n/a	n/a
35	CBX3	chr6:31461468-31462341	K562	blood:	n/a	chr6:31461534-31461545
36	CBX3	chr6:31465272-31466294	K562	blood:	n/a	n/a
37	CCNT2	chr6:31465489-31466233	K562	blood:	n/a	n/a
38	CCNT2	chr6:31461596-31462186	K562	blood:	n/a	n/a
39	CCNT2	chr6:31458378-31458521	K562	blood:	n/a	n/a
40	CEBPB	chr6:31464089-31464308	IMR90	lung:	n/a	chr6:31464199-31464210
41	CEBPB	chr6:31470447-31470707	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr6:31464157-31464355	HepG2	liver:	n/a	chr6:31464199-31464210
43	CEBPB	chr6:31464089-31464261	HepG2	liver:	n/a	chr6:31464199-31464210
44	CEBPB	chr6:31459658-31459957	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr6:31465739-31465801	HepG2	liver:	n/a	n/a
46	CEBPB	chr6:31461590-31461874	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr6:31470457-31470685	IMR90	lung:	n/a	n/a
48	CEBPB	chr6:31464090-31464316	Hela-S3	cervix:	n/a	chr6:31464199-31464210
49	CEBPB	chr6:31464071-31464358	K562	blood:	n/a	chr6:31464199-31464210
50	CEBPB	chr6:31464088-31464301	H1-hESC	embryonic stem cell:	n/a	chr6:31464199-31464210

(count:6546 , 50 per page) page: 1 2 3 4 5 6 7 ... 131

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31459944-31459994	ovcar-3	ovarian:	n/a
2	chr6:31475887-31475937	Hepatocyte	liver:	n/a
3	chr6:31465958-31466008	AG04450	lung:	fetal
4	chr6:31465685-31465735	PFSK-1	brain:	n/a
5	chr6:31459698-31459748	GM19239	blood:	n/a
6	chr6:31459944-31459994	AG04449	skin:	fetal
7	chr6:31460088-31460138	BE2_C	brain:	n/a
8	chr6:31475055-31475105	HMEC	breast:	n/a
9	chr6:31465961-31466011	ProgFib	skin:	n/a
10	chr6:31466119-31466169	AG09309	skin:	n/a
11	chr6:31465556-31465606	HL-60	blood:	n/a
12	chr6:31465685-31465735	HNPCEpiC	eye:	n/a
13	chr6:31459901-31459951	HMEC	breast:	n/a
14	chr6:31461850-31461900	SAEC	small airway:	n/a
15	chr6:31462081-31462131	GM12892	blood:	n/a
16	chr6:31462183-31462233	LNCaP	prostate:	n/a
17	chr6:31473513-31473563	HRPEpiC	eye:	n/a
18	chr6:31465075-31465125	HIPEpiC	eye:	n/a
19	chr6:31475943-31475993	SKMC	muscle:	n/a
20	chr6:31459944-31459994	ovcar-3	ovarian:	n/a
21	chr6:31475887-31475937	Hepatocyte	liver:	n/a
22	chr6:31465958-31466008	AG04450	lung:	fetal
23	chr6:31465685-31465735	PFSK-1	brain:	n/a
24	chr6:31459698-31459748	GM19239	blood:	n/a
25	chr6:31459944-31459994	AG04449	skin:	fetal
26	chr6:31460088-31460138	BE2_C	brain:	n/a
27	chr6:31475055-31475105	HMEC	breast:	n/a
28	chr6:31465961-31466011	ProgFib	skin:	n/a
29	chr6:31466119-31466169	AG09309	skin:	n/a
30	chr6:31465556-31465606	HL-60	blood:	n/a
31	chr6:31465685-31465735	HNPCEpiC	eye:	n/a
32	chr6:31459901-31459951	HMEC	breast:	n/a
33	chr6:31461850-31461900	SAEC	small airway:	n/a
34	chr6:31462081-31462131	GM12892	blood:	n/a
35	chr6:31462183-31462233	LNCaP	prostate:	n/a
36	chr6:31473513-31473563	HRPEpiC	eye:	n/a
37	chr6:31465075-31465125	HIPEpiC	eye:	n/a
38	chr6:31475943-31475993	SKMC	muscle:	n/a
39	chr6:31466726-31466776	HRPEpiC	eye:	n/a
40	chr6:31458944-31458994	ovcar-3	ovarian:	n/a
41	chr6:31475392-31475442	HepG2	liver:	n/a
42	chr6:31462234-31462284	MCF10A-Er-Src	breast:	n/a
43	chr6:31468957-31469007	GM12892	blood:	n/a
44	chr6:31464955-31465005	AG10803	skin:	n/a
45	chr6:31461931-31461981	LNCaP	prostate:	n/a
46	chr6:31468098-31468148	HNPCEpiC	eye:	n/a
47	chr6:31474279-31474329	SK-N-MC	brain:	n/a
48	chr6:31459999-31460049	BJ	skin:	n/a
49	chr6:31465898-31465948	HepG2	liver:	n/a
50	chr6:31465369-31465419	LNCaP	prostate:	n/a

(count:69 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:31464396..31467286-chr6:31513352..31515783,2	MCF-7	breast:
2	chr6:31458267..31460051-chr6:31509847..31511865,2	K562	blood:
3	chr6:31461360..31462200-chr6:31564947..31565457,2	K562	blood:
4	chr6:31460255..31464524-chr6:31513189..31516444,5	K562	blood:
5	chr6:31465192..31467276-chr6:31514353..31517870,3	K562	blood:
6	chr6:31461211..31463484-chr6:31498734..31500993,3	K562	blood:
7	chr6:31463965..31465758-chr6:31589334..31591777,2	K562	blood:
8	chr6:29944580..29945510-chr6:31461603..31462125,3	HCT-116	colon:
9	chr6:31471170..31473620-chr6:31507634..31510335,2	K562	blood:
10	chr6:31461608..31462222-chr6:31514557..31515072,2	K562	blood:
11	chr6:31465292..31466331-chr6:31508544..31510586,5	MCF-7	breast:
12	chr6:31465192..31467253-chr6:31513874..31515853,2	K562	blood:
13	chr6:31469893..31472670-chr6:31507634..31510458,2	K562	blood:
14	chr6:31371212..31373012-chr6:31465963..31468535,2	MCF-7	breast:
15	chr6:31464742..31467126-chr6:31475926..31478030,2	MCF-7	breast:
16	chr6:31164998..31165548-chr6:31461463..31462414,2	Hela-S3	cervix:
17	chr6:31465504..31467038-chr6:31547558..31550219,2	K562	blood:
18	chr6:31462975..31464930-chr6:31587251..31589208,2	MCF-7	breast:
19	chr6:31461147..31462941-chr6:31618531..31620077,2	K562	blood:
20	chr6:31461159..31464326-chr6:31493652..31499334,8	K562	blood:
21	chr6:31457500..31459013-chr6:31460280..31462623,2	K562	blood:
22	chr6:31456114..31459905-chr6:31495934..31499103,3	K562	blood:
23	chr6:31461866..31464235-chr6:31513189..31515982,2	K562	blood:
24	chr6:31460948..31461720-chr6:31514497..31515098,2	MCF-7	breast:
25	chr6:31164763..31166450-chr6:31463766..31465501,2	K562	blood:
26	chr6:31459710..31467567-chr6:31506191..31511027,18	MCF-7	breast:
27	chr6:31461622..31462526-chr6:31514129..31514895,2	MCF-7	breast:
28	chr6:31459804..31465340-chr6:31474468..31477294,4	K562	blood:
29	chr6:31459795..31462964-chr6:31499493..31502905,3	K562	blood:
30	chr6:31472930..31475358-chr6:31476067..31478432,2	K562	blood:
31	chr6:31465772..31468196-chr6:31473322..31475577,2	K562	blood:
32	chr6:31465772..31468196-chr6:31473322..31475577,2	K562	blood:
33	chr6:31467244..31469846-chr6:31506676..31510061,3	MCF-7	breast:
34	chr6:31460672..31463218-chr6:31514855..31517423,2	MCF-7	breast:
35	chr6:31464473..31467635-chr6:31497399..31499705,3	K562	blood:
36	chr6:31459629..31460383-chr6:31566089..31567042,2	MCF-7	breast:
37	chr6:29718134..29720156-chr6:31462731..31465532,2	MCF-7	breast:
38	chr6:29945013..29945528-chr6:31461611..31462151,2	MCF-7	breast:
39	chr6:31459784..31461432-chr6:31485097..31486875,2	K562	blood:
40	chr6:31459935..31461853-chr6:31464053..31467261,4	K562	blood:
41	chr6:31474674..31479009-chr6:31499969..31503821,5	K562	blood:
42	chr6:31459984..31462302-chr6:31464597..31467280,2	MCF-7	breast:
43	chr6:31458384..31468965-chr6:31503613..31512721,28	K562	blood:
44	chr6:31461691..31462229-chr6:31496014..31496754,2	MCF-7	breast:
45	chr6:31459878..31461795-chr6:31557754..31559945,2	K562	blood:
46	chr6:31463303..31465758-chr6:31589334..31591958,3	K562	blood:
47	chr6:31365846..31369030-chr6:31460300..31464467,7	K562	blood:
48	chr6:31371228..31373084-chr6:31465857..31468794,2	K562	blood:
49	chr6:31461211..31462110-chr6:31566059..31566733,2	MCF-7	breast:
50	chr6:31365716..31368807-chr6:31460300..31464467,6	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP6V1G2-DDX39B-2	chr6:31470089-31470973	l_3166_chr6:31470088-31474400_lung
2	lnc-ATP6V1G2-DDX39B-2	chr6:31473815-31474714	l_3166_chr6:31470088-31474400_lung

No data

Variant related genes	Relation type
MICB	TF binding region
ENSG00000201680	TF binding region
MICB	CpG island
ENSG00000201680	CpG island
ENSG00000235821	chromatin interactions
ENSG00000204520	chromatin interactions
ENSG00000206344	chromatin interactions
ENSG00000198563	chromatin interactions
ENSG00000265236	chromatin interactions
ENSG00000227507	chromatin interactions
ENSG00000213760	chromatin interactions
ENSG00000201680	chromatin interactions
ENSG00000199290	chromatin interactions
ENSG00000204469	chromatin interactions
ENSG00000200816	chromatin interactions
ENSG00000272236	chromatin interactions
ENSG00000206337	chromatin interactions
ENSG00000199332	chromatin interactions
ENSG00000204463	chromatin interactions
ENSG00000204498	chromatin interactions
ENSG00000204516	chromatin interactions
ENSG00000256851	chromatin interactions
ENSG00000226174	chromatin interactions
ENSG00000272501	chromatin interactions
ENSG00000225499	chromatin interactions
ENSG00000204625	chromatin interactions
ENSG00000254870	chromatin interactions
ENSG00000201785	chromatin interactions
ENSG00000204511	chromatin interactions
ENSG00000234006	chromatin interactions

Extended variants
information (count: 835 )
Associated
traits (count: 140 )

Variant overlapped rSNPs/rCNVs (count:835 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs527395319	chr6:31458286-31458287	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
2	rs375481528	chr6:31458289-31458290	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
3	rs2428499	chr6:31458293-31458294	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs188878585	chr6:31458334-31458335	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
5	rs569327454	chr6:31458355-31458356	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs375103602	chr6:31458369-31458370	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
7	rs192925676	chr6:31458399-31458400	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
8	rs114735831	chr6:31458400-31458401	Bivalent Enhancer Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
9	rs371418027	chr6:31458414-31458415	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
10	rs374703530	chr6:31458427-31458428	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
11	rs12660469	chr6:31458443-31458444	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs2428498	chr6:31458460-31458461	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs2507963	chr6:31458464-31458465	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs2507962	chr6:31458483-31458484	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs115322053	chr6:31458496-31458497	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
16	rs9267293	chr6:31458508-31458509	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs9267294	chr6:31458514-31458515	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs62395344	chr6:31458524-31458525	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs2395033	chr6:31458554-31458555	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs555507427	chr6:31458568-31458569	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
21	rs375023823	chr6:31458583-31458584	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
22	rs368787385	chr6:31458602-31458603	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
23	rs372167497	chr6:31458605-31458606	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
24	rs375244968	chr6:31458610-31458611	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
25	rs573791177	chr6:31458620-31458621	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
26	rs9267296	chr6:31458626-31458627	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs202091188	chr6:31458630-31458631	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
28	rs562490619	chr6:31458632-31458633	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs562988013	chr6:31458633-31458634	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs532758278	chr6:31458634-31458635	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs552033817	chr6:31458659-31458660	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs367909467	chr6:31458677-31458678	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs544565409	chr6:31458694-31458695	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
34	rs372035449	chr6:31458735-31458736	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
35	rs369433970	chr6:31458751-31458752	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs115153905	chr6:31458752-31458753	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs372915728	chr6:31458756-31458757	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs184395442	chr6:31458783-31458784	Bivalent Enhancer Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs374233810	chr6:31458807-31458808	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
40	rs7744016	chr6:31458827-31458828	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs188755730	chr6:31458898-31458899	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
42	rs111393177	chr6:31458908-31458909	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
43	rs2905725	chr6:31458936-31458937	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs2905724	chr6:31458954-31458955	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs142272668	chr6:31458982-31458983	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
46	rs556503353	chr6:31458983-31458984	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
47	rs575015476	chr6:31458985-31458986	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
48	rs539123970	chr6:31458991-31458992	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
49	rs2395490	chr6:31458993-31458994	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	mRNA abundance
50	rs371376376	chr6:31459012-31459013	Bivalent Enhancer Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:140)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
abnormal development	18461090	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Breast cancer	21364760	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Cancer	20164919	CNVD
Schizophrenia	23813976	CNVD
Williams Syndrome	20824207	CNVD
Schizophrenia	21346763	CNVD
Nasopharyngeal cancer	20548289	CNVD
Nasopharyngeal cancer	20551993	CNVD
Type 2 diabetes	21526130	CNVD
Prostate cancer	22341455	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:1288 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31433400-31459400	Weak transcription	Fetal Thymus	thymus
2	chr6:31433400-31459600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:31433400-31459600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:31434600-31459600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:31438200-31461600	Weak transcription	Small Intestine	intestine
6	chr6:31442400-31459400	Weak transcription	Primary T cells from cord blood	blood
7	chr6:31442600-31459400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:31443000-31458400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:31443000-31461600	Weak transcription	Right Atrium	heart
10	chr6:31445000-31459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:31445200-31459400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:31446200-31461600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:31447200-31459400	Weak transcription	Primary B cells from cord blood	blood
14	chr6:31453200-31458600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:31453400-31459600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:31453400-31459600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:31453400-31459600	Weak transcription	NHDF-Ad	bronchial
18	chr6:31453400-31459800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:31453600-31459600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:31453600-31459600	Weak transcription	NHLF	lung
21	chr6:31453600-31461200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:31453800-31459600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:31455400-31459400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr6:31455400-31460000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:31455800-31459000	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:31455800-31459400	Weak transcription	HMEC	breast
27	chr6:31455800-31461400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:31456000-31458600	Weak transcription	GM12878-XiMat	blood
29	chr6:31456000-31459600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:31456000-31459600	Weak transcription	NHEK	skin
31	chr6:31456000-31461600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:31456200-31459600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:31456200-31461800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:31456400-31458800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr6:31456400-31459400	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:31457000-31458400	Strong transcription	Dnd41	blood
37	chr6:31457200-31458400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:31457200-31458600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:31457200-31461600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:31457400-31459000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:31458000-31458400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:31458000-31461400	Weak transcription	Colonic Mucosa	Colon
43	chr6:31458200-31458400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:31458200-31458400	Bivalent Enhancer	Placenta	Placenta
45	chr6:31458200-31458600	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:31458200-31458800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr6:31458200-31458800	Strong transcription	Thymus	Thymus
48	chr6:31458200-31459000	Flanking Active TSS	K562	blood
49	chr6:31458200-31459200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:31458200-31459400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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