Variant report

Variant	esv1825980
Chromosome Location	chr7:63817313-63844818
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:63818124..63820265-chr7:63820737..63823349,2	MCF-7	breast:
2	chr7:63810767..63813446-chr7:63828000..63830208,2	K562	blood:
3	chr7:63808452..63810015-chr7:63818537..63821192,2	K562	blood:
4	chr7:63818124..63820265-chr7:63820737..63823349,2	MCF-7	breast:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124
2	lnc-ZNF736-1	chr7:63831907-63831978	XLOC_006123
3	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
4	lnc-ZNF736-1	chr7:63832148-63832189	XLOC_006123
5	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
6	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
7	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123

No data

Variant related genes	Relation type
RAB5C	miRNA target sites
CDV3	miRNA target sites
CDX2	miRNA target sites

Extended variants
information (count: 591 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:591 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569013682	chr7:63817326-63817327	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs538051088	chr7:63817343-63817344	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs2863322	chr7:63817362-63817363	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs62461462	chr7:63817381-63817382	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs374764615	chr7:63817396-63817397	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs193181345	chr7:63817406-63817407	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs534318704	chr7:63817427-63817428	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs553960296	chr7:63817447-63817448	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs577184641	chr7:63817450-63817451	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs73135644	chr7:63817472-63817473	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs542529007	chr7:63817477-63817478	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs1993894	chr7:63817488-63817489	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs542112727	chr7:63817493-63817494	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs561971545	chr7:63817520-63817521	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs142506171	chr7:63817548-63817549	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs575913702	chr7:63817584-63817585	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs141462758	chr7:63817585-63817586	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs367861236	chr7:63817588-63817589	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs540336304	chr7:63817590-63817591	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs559960570	chr7:63817612-63817613	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs185057062	chr7:63817693-63817694	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs556860328	chr7:63817694-63817695	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs544867171	chr7:63817765-63817766	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs10280161	chr7:63817771-63817772	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs568862232	chr7:63817796-63817797	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs146411412	chr7:63817799-63817800	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs140806736	chr7:63817822-63817823	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs189904960	chr7:63817854-63817855	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs619620	chr7:63817862-63817863	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
30	rs547892609	chr7:63817869-63817870	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs545551270	chr7:63817876-63817877	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs559315537	chr7:63817886-63817887	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs11762700	chr7:63817887-63817888	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs539912457	chr7:63817947-63817948	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs556327871	chr7:63817994-63817995	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs192557343	chr7:63818020-63818021	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs183632168	chr7:63818023-63818024	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs548079241	chr7:63818036-63818037	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs117873029	chr7:63818049-63818050	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs74199026	chr7:63818052-63818053	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs541216147	chr7:63818059-63818060	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs10235000	chr7:63818079-63818080	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs374690707	chr7:63818145-63818146	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs574047547	chr7:63818165-63818166	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs545881874	chr7:63818167-63818168	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs562498042	chr7:63818175-63818176	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs621054	chr7:63818176-63818177	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs548520661	chr7:63818211-63818212	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs570534034	chr7:63818220-63818221	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs71060591	chr7:63818225-63818226	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Hepatocellular carcinoma	22267523	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63776600-63817800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:63790200-63820200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr7:63790200-63826600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:63801200-63818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:63813400-63817400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:63813800-63817400	Weak transcription	Aorta	Aorta
7	chr7:63817000-63819200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr7:63817400-63817600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:63817400-63817800	ZNF genes & repeats	Aorta	Aorta
10	chr7:63817400-63817800	ZNF genes & repeats	Dnd41	blood
11	chr7:63817400-63818000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr7:63817400-63818000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:63817400-63818000	ZNF genes & repeats	Right Ventricle	heart
14	chr7:63817600-63819200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
15	chr7:63817600-63819600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr7:63819200-63820400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr7:63820600-63821000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr7:63822600-63825000	ZNF genes & repeats	Liver	Liver
19	chr7:63823000-63824000	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart
21	chr7:63830000-63830200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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