Variant report

Variant	esv1826142
Chromosome Location	chr17:45126113-45131712
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPRML-3	chr17:45128652-45128968	NONHSAT054254
2	lnc-RPRML-3	chr17:45129070-45129168	NONHSAT054254
3	lnc-RPRML-3	chr17:45129892-45131988	NONHSAT054259
4	lnc-GOSR2-2	chr17:45131638-45133274	NONHSAT054261
5	lnc-CDC27-2	chr17:45129070-45129168	ENSG00000250104
6	lnc-GOSR2-2	chr17:45131093-45131559	NONHSAT054261
7	lnc-GOSR2-2	chr17:45126422-45126511	NONHSAT054231
8	lnc-GOSR2-2	chr17:45126422-45131777	NONHSAT054246
9	lnc-RPRML-3	chr17:45126241-45127901	NONHSAT054248
10	lnc-CDC27-2	chr17:45128639-45128968	ENSG00000250104

No data

Variant related genes	Relation type
UTP15	miRNA target sites
STARD7	miRNA target sites

Extended variants
information (count: 220 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:220 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537599467	chr17:45126152-45126153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs9914460	chr17:45126162-45126163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558008305	chr17:45126207-45126208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571738871	chr17:45126273-45126274	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs534268289	chr17:45126312-45126313	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs554332464	chr17:45126351-45126352	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs3180780	chr17:45126367-45126368	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs543046885	chr17:45126406-45126407	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs556537403	chr17:45126422-45126423	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs576676605	chr17:45126436-45126437	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs2684471	chr17:45126488-45126489	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs545168901	chr17:45126494-45126495	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs565152635	chr17:45126497-45126498	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs527908850	chr17:45126498-45126499	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs539936600	chr17:45126511-45126512	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs560234886	chr17:45126526-45126527	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs2684472	chr17:45126541-45126542	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs553500638	chr17:45126551-45126552	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs528843720	chr17:45126599-45126600	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs548967491	chr17:45126614-45126615	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs150816476	chr17:45126615-45126616	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs531651655	chr17:45126617-45126618	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs139254155	chr17:45126619-45126620	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs551736947	chr17:45126624-45126625	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs189573840	chr17:45126625-45126626	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs534023158	chr17:45126629-45126630	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs554295678	chr17:45126632-45126633	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs567756366	chr17:45126675-45126676	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs536204924	chr17:45126717-45126718	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs1054835	chr17:45126741-45126742	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs4060928	chr17:45126745-45126746	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs1054834	chr17:45126750-45126751	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs556541995	chr17:45126762-45126763	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs1054833	chr17:45126769-45126770	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs576626050	chr17:45126810-45126811	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs371193522	chr17:45126874-45126875	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs558870413	chr17:45126916-45126917	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs144449853	chr17:45126925-45126926	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs532500988	chr17:45126931-45126932	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs541236073	chr17:45126942-45126943	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs559946322	chr17:45126961-45126962	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs529007726	chr17:45126976-45126977	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs542227099	chr17:45126991-45126992	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs199743392	chr17:45126992-45126993	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs562491541	chr17:45127014-45127015	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs531358747	chr17:45127061-45127062	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs551695549	chr17:45127069-45127070	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs527440390	chr17:45127077-45127078	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs547570355	chr17:45127102-45127103	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs374963948	chr17:45127107-45127108	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell lymphomas	19863542	CNVD
Cancer	16751803	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Breast cancer	17457667	CNVD
Breast cancer	16951389	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Breast cancer	17603634	CNVD
Follicular lymphoma	20505157	CNVD
Non-small cell lung cancer	20864512	CNVD
Cancer	21183584	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	20953835	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
TAR Syndrome	17847015	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	17850661	CNVD
Breast cancer	19261255	CNVD
Lung cancer	16773561	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Basal-like breast cancer	18066063	CNVD
Breast cancer	20031965	CNVD
Colorectal cancer	19287155	CNVD
Hereditary breast	19566914	CNVD
Ovarian cancer	19047089	CNVD
Ovarian cancer	19566914	CNVD
Triple-negative breast cancer	18950515	CNVD
Breast cancer	16846527	CNVD
Bladder cancer	21909424	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Acute myeloid leukemia	21251322	CNVD
Ewing''s sarcoma	22429812	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21509527	CNVD
Urothelial carcinoma	21177765	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Breast cancer	17142309	CNVD
Breast cancer	16397240	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	17217626	CNVD
Non-syndromic sensorineural hearing loss	21084979	CNVD
Autism	22817714	CNVD
Breast cancer	20409316	CNVD
Cancer	17160897	CNVD
Frontotemporal lobar degeneration	19640594	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:205 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45075200-45130200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:45086000-45129600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr17:45086000-45129600	Weak transcription	Fetal Muscle Leg	muscle
4	chr17:45086800-45129600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr17:45087200-45126600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr17:45087600-45129600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:45088600-45128600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:45090000-45131600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:45090200-45131000	Weak transcription	Dnd41	blood
10	chr17:45090600-45129600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:45091200-45129600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr17:45094200-45129600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr17:45095000-45130200	Weak transcription	Brain Anterior Caudate	brain
14	chr17:45096200-45131000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:45096400-45129600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:45096800-45129600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:45096800-45129600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:45097400-45129600	Weak transcription	Fetal Stomach	stomach
19	chr17:45109600-45129800	Weak transcription	Fetal Thymus	thymus
20	chr17:45119400-45130200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr17:45120600-45129600	Weak transcription	Fetal Lung	lung
22	chr17:45121400-45142200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr17:45122000-45129600	Weak transcription	Fetal Intestine Small	intestine
24	chr17:45123200-45129600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr17:45123800-45129600	Weak transcription	Osteobl	bone
26	chr17:45123800-45143600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr17:45124000-45131400	Weak transcription	GM12878-XiMat	blood
28	chr17:45124200-45129600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr17:45124800-45130200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr17:45124800-45130800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr17:45125000-45129600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:45125000-45129600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr17:45125000-45129600	Weak transcription	Thymus	Thymus
34	chr17:45125000-45130200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr17:45125000-45130200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:45125000-45130400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr17:45125000-45133400	Weak transcription	Fetal Brain Female	brain
38	chr17:45125200-45129600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr17:45125200-45130800	Weak transcription	Fetal Kidney	kidney
40	chr17:45125200-45132400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr17:45125200-45143600	Weak transcription	HepG2	liver
42	chr17:45125400-45130200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr17:45125400-45132400	Weak transcription	Right Ventricle	heart
44	chr17:45125400-45133200	Weak transcription	Gastric	stomach
45	chr17:45125400-45133400	Weak transcription	Pancreas	Pancrea
46	chr17:45125400-45143800	Weak transcription	NHLF	lung
47	chr17:45125600-45130200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr17:45125600-45130200	Weak transcription	HMEC	breast
49	chr17:45126200-45129600	Weak transcription	Adipose Nuclei	Adipose
50	chr17:45126600-45127200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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