Variant report

Variant	esv1826228
Chromosome Location	chr7:99564091-99625688
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2554)
CpG islands
(count:2200)
Chromatin interactive
region (count:133)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2554 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:99591808-99592148	HepG2	liver:	n/a	n/a
2	ARID3A	chr7:99595227-99595537	HepG2	liver:	n/a	n/a
3	ARID3A	chr7:99612999-99613317	HepG2	liver:	n/a	n/a
4	ARID3A	chr7:99573511-99574236	HepG2	liver:	n/a	n/a
5	ARID3A	chr7:99588540-99588839	HepG2	liver:	n/a	n/a
6	ARID3A	chr7:99591850-99592144	K562	blood:	n/a	n/a
7	ARID3A	chr7:99588561-99588855	K562	blood:	n/a	n/a
8	ARID3A	chr7:99610285-99610671	HepG2	liver:	n/a	n/a
9	ARID3A	chr7:99621722-99621985	HepG2	liver:	n/a	n/a
10	ARID3A	chr7:99578392-99578401	HepG2	liver:	n/a	n/a
11	ARID3A	chr7:99613002-99613272	K562	blood:	n/a	n/a
12	ARID3A	chr7:99614020-99614567	HepG2	liver:	n/a	n/a
13	ARID3A	chr7:99577288-99577300	K562	blood:	n/a	n/a
14	ARID3A	chr7:99601325-99601936	HepG2	liver:	n/a	n/a
15	ATF1	chr7:99613008-99613355	K562	blood:	n/a	n/a
16	ATF2	chr7:99612925-99613402	GM12878	blood:	n/a	n/a
17	ATF2	chr7:99623674-99624169	GM12878	blood:	n/a	n/a
18	ATF2	chr7:99595132-99595501	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr7:99588414-99588699	GM12878	blood:	n/a	n/a
20	ATF2	chr7:99612922-99613352	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr7:99595114-99595627	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr7:99588383-99588853	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF3	chr7:99588519-99588908	A549	lung:	n/a	n/a
24	ATF3	chr7:99612906-99613380	A549	lung:	n/a	n/a
25	ATF3	chr7:99612938-99613479	K562	blood:	n/a	n/a
26	BACH1	chr7:99612991-99613276	H1-hESC	embryonic stem cell:	n/a	n/a
27	BACH1	chr7:99588600-99588743	K562	blood:	n/a	n/a
28	BATF	chr7:99623746-99624108	GM12878	blood:	n/a	chr7:99623935-99623946
29	BATF	chr7:99612974-99613349	GM12878	blood:	n/a	n/a
30	BATF	chr7:99623677-99624143	GM12878	blood:	n/a	chr7:99623935-99623946
31	BCL3	chr7:99612943-99613384	A549	lung:	n/a	chr7:99613205-99613214
32	BCL3	chr7:99612971-99613328	GM12878	blood:	n/a	chr7:99613205-99613214
33	BCLAF1	chr7:99623673-99624175	GM12878	blood:	n/a	n/a
34	BCLAF1	chr7:99612943-99613345	GM12878	blood:	n/a	chr7:99613205-99613214
35	BCLAF1	chr7:99595032-99595589	GM12878	blood:	n/a	chr7:99595317-99595326
36	BCLAF1	chr7:99612895-99613380	GM12878	blood:	n/a	chr7:99613205-99613214
37	BHLHE40	chr7:99601366-99601918	HepG2	liver:	n/a	n/a
38	BHLHE40	chr7:99591934-99592020	K562	blood:	n/a	n/a
39	BHLHE40	chr7:99576876-99576892	K562	blood:	n/a	n/a
40	BHLHE40	chr7:99623878-99624027	GM12878	blood:	n/a	n/a
41	BHLHE40	chr7:99595201-99595644	HepG2	liver:	n/a	n/a
42	BHLHE40	chr7:99612987-99613358	K562	blood:	n/a	n/a
43	BHLHE40	chr7:99588564-99588813	K562	blood:	n/a	n/a
44	BHLHE40	chr7:99621688-99622047	HepG2	liver:	n/a	n/a
45	BHLHE40	chr7:99577501-99577734	GM12878	blood:	n/a	n/a
46	BHLHE40	chr7:99573751-99574031	HepG2	liver:	n/a	n/a
47	BHLHE40	chr7:99577510-99577734	K562	blood:	n/a	n/a
48	BHLHE40	chr7:99595199-99595648	GM12878	blood:	n/a	n/a
49	BRCA1	chr7:99612967-99613336	Hela-S3	cervix:	n/a	n/a
50	BRCA1	chr7:99601493-99601826	HepG2	liver:	n/a	n/a

(count:2200 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:99613192-99613242	BJ	skin:	n/a
2	chr7:99595348-99595398	Hela-S3	cervix:	n/a
3	chr7:99614209-99614259	NH-A	brain:	n/a
4	chr7:99588335-99588385	HPAEpiC	pulmonary alveolar:	n/a
5	chr7:99613192-99613242	BJ	skin:	n/a
6	chr7:99595348-99595398	Hela-S3	cervix:	n/a
7	chr7:99614209-99614259	NH-A	brain:	n/a
8	chr7:99588335-99588385	HPAEpiC	pulmonary alveolar:	n/a
9	chr7:99591962-99592012	Caco-2	colon:	n/a
10	chr7:99573747-99573797	BE2_C	brain:	n/a
11	chr7:99598775-99598825	HAEpiC	amniotic membrane:	n/a
12	chr7:99587136-99587186	A549	lung:	n/a
13	chr7:99588657-99588707	HNPCEpiC	eye:	n/a
14	chr7:99595437-99595487	PANC-1	pancreas:	n/a
15	chr7:99576547-99576597	GM12878	blood:	n/a
16	chr7:99612715-99612765	HRPEpiC	eye:	n/a
17	chr7:99588561-99588611	GM12892	blood:	n/a
18	chr7:99598775-99598825	HCT-116	colon:	n/a
19	chr7:99612634-99612684	RPTEC	kidney:	n/a
20	chr7:99588335-99588385	Hela-S3	cervix:	n/a
21	chr7:99613244-99613294	AoSMC	blood vessel:	n/a
22	chr7:99595658-99595708	SAEC	small airway:	n/a
23	chr7:99613796-99613846	HepG2	liver:	n/a
24	chr7:99573278-99573328	HCT-116	colon:	n/a
25	chr7:99613192-99613242	HPAEpiC	pulmonary alveolar:	n/a
26	chr7:99595437-99595487	SK-N-SH	brain:	n/a
27	chr7:99595437-99595487	GM06990	blood:	n/a
28	chr7:99595437-99595487	AG09319	gingival:	n/a
29	chr7:99595658-99595708	AG09309	skin:	n/a
30	chr7:99591962-99592012	PrEC	prostate:	n/a
31	chr7:99613192-99613242	GM12878	blood:	n/a
32	chr7:99598775-99598825	HRPEpiC	eye:	n/a
33	chr7:99588335-99588385	LNCaP	prostate:	n/a
34	chr7:99612773-99612823	BE2_C	brain:	n/a
35	chr7:99576539-99576589	LNCaP	prostate:	n/a
36	chr7:99613105-99613155	NH-A	brain:	n/a
37	chr7:99613796-99613846	GM19239	blood:	n/a
38	chr7:99613105-99613155	HCPEpiC	choroid plexus:	n/a
39	chr7:99595276-99595326	HCPEpiC	choroid plexus:	n/a
40	chr7:99612634-99612684	NHBE	bronchial:	n/a
41	chr7:99574420-99574470	HEEpiC	esophagus:	n/a
42	chr7:99613105-99613155	SK-N-SH_RA	brain:	n/a
43	chr7:99595095-99595145	IMR90	lung:	fetal
44	chr7:99595458-99595508	BJ	skin:	n/a
45	chr7:99574420-99574470	HL-60	blood:	n/a
46	chr7:99591962-99592012	HCF	heart:	n/a
47	chr7:99588273-99588323	GM19239	blood:	n/a
48	chr7:99576547-99576597	SK-N-SH_RA	brain:	n/a
49	chr7:99564474-99564524	HUVEC	blood vessel:	n/a
50	chr7:99614209-99614259	GM12891	blood:	n/a

(count:133 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr7:99611817..99614127-chr7:99645173..99647750,3	K562	blood:
2	chr7:99618852..99620390-chr7:99647489..99649484,2	MCF-7	breast:
3	chr10:43133589..43134241-chr7:99612910..99613726,2	NB4	blood:
4	chr7:99613052..99614661-chr7:99625234..99626812,2	MCF-7	breast:
5	chr7:99590363..99592421-chr7:99597136..99600060,2	MCF-7	breast:
6	chr7:99564809..99567213-chr7:99568029..99570135,2	K562	blood:
7	chr16:56966049..56966601-chr7:99612783..99613720,2	NB4	blood:
8	chr7:99601965..99606251-chr7:99612417..99615707,8	K562	blood:
9	chr7:99528952..99531320-chr7:99615014..99616984,2	K562	blood:
10	chr7:99509274..99509946-chr7:99588276..99588980,2	MCF-7	breast:
11	chr7:99591491..99592473-chr7:99650892..99651464,2	K562	blood:
12	chr7:99600927..99603522-chr7:99678013..99680469,2	MCF-7	breast:
13	chr7:99588651..99591308-chr7:99612703..99615208,2	K562	blood:
14	chr7:99592003..99594227-chr7:99676787..99679509,2	K562	blood:
15	chr7:99577524..99578039-chr7:99588237..99589217,3	K562	blood:
16	chr7:99588733..99590753-chr7:99595568..99598472,2	K562	blood:
17	chr7:99599411..99601548-chr7:99605711..99608652,3	MCF-7	breast:
18	chr7:99588651..99591308-chr7:99612703..99615208,2	K562	blood:
19	chr7:99516539..99518815-chr7:99613011..99615072,3	K562	blood:
20	chr7:99594172..99596915-chr7:99619216..99620782,2	K562	blood:
21	chr7:99612131..99615242-chr7:99723277..99726662,3	K562	blood:
22	chr7:99604525..99607316-chr7:99612606..99614648,4	MCF-7	breast:
23	chr7:99527164..99527840-chr7:99588241..99588943,3	MCF-7	breast:
24	chr7:99524861..99526650-chr7:99605841..99607428,2	MCF-7	breast:
25	chr7:99590918..99594546-chr7:99596737..99599787,3	K562	blood:
26	chr7:99594172..99596915-chr7:99619216..99620782,2	K562	blood:
27	chr7:99590363..99592421-chr7:99597136..99600060,2	MCF-7	breast:
28	chr7:99612275..99615910-chr7:99677885..99681193,8	K562	blood:
29	chr7:99611430..99615857-chr7:99675156..99681193,15	K562	blood:
30	chr7:99599411..99601548-chr7:99605711..99608652,3	MCF-7	breast:
31	chr7:99588575..99590179-chr7:99697467..99700310,2	K562	blood:
32	chr7:99609554..99611376-chr7:99679608..99681237,2	K562	blood:
33	chr1:45196470..45197118-chr7:99613158..99613683,2	Hela-S3	cervix:
34	chr7:99617125..99619542-chr7:99633323..99635330,2	K562	blood:
35	chr7:99620109..99621730-chr7:99637270..99638942,2	MCF-7	breast:
36	chr7:99608355..99609979-chr7:99641023..99642646,2	MCF-7	breast:
37	chr7:99589618..99593496-chr7:99594204..99595870,4	K562	blood:
38	chr7:99601499..99602018-chr7:99663035..99663790,2	MCF-7	breast:
39	chr7:99601356..99603407-chr7:99644840..99648336,3	MCF-7	breast:
40	chr7:99591865..99592813-chr7:99679412..99679994,2	K562	blood:
41	chr7:99612325..99614517-chr7:99685585..99687271,2	MCF-7	breast:
42	chr7:99615508..99617156-chr7:99618905..99620431,2	MCF-7	breast:
43	chr7:99589288..99591810-chr7:99612834..99614804,4	MCF-7	breast:
44	chr7:99214190..99217311-chr7:99612118..99614634,3	K562	blood:
45	chr7:99613754..99615518-chr7:99715679..99717343,2	K562	blood:
46	chr7:99577524..99578039-chr7:99588237..99589217,3	K562	blood:
47	chr7:99612024..99615373-chr7:99646672..99650813,5	MCF-7	breast:
48	chr7:99515474..99518311-chr7:99585562..99587097,2	K562	blood:
49	chr7:99588806..99591548-chr7:99620634..99622161,2	MCF-7	breast:
50	chr7:99577230..99578015-chr7:99588605..99589135,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZKSCAN1-1	chr7:99595355-99595546	XLOC_006188
2	lnc-ZKSCAN1-1	chr7:99597006-99597115	XLOC_006188
3	lnc-ZKSCAN1-1	chr7:99606205-99606730	XLOC_006188
4	lnc-ZKSCAN1-1	chr7:99608999-99609239	XLOC_006188
5	lnc-ZKSCAN1-1	chr7:99608999-99609247	XLOC_006188
6	lnc-ZKSCAN1-1	chr7:99594667-99594733	XLOC_006188
7	lnc-ZKSCAN1-1	chr7:99605744-99605862	XLOC_006188
8	lnc-ZKSCAN1-1	chr7:99605931-99605945	XLOC_006188
9	lnc-ZKSCAN1-1	chr7:99608999-99609249	XLOC_006188
10	lnc-ZKSCAN1-1	chr7:99597123-99597186	XLOC_006188
11	lnc-ZKSCAN1-1	chr7:99605669-99605945	XLOC_006188
12	lnc-ZKSCAN1-2	chr7:99587971-99588326	expReg_chr7_6373_+
13	lnc-ZKSCAN1-1	chr7:99597002-99597115	XLOC_006188
14	lnc-ZKSCAN1-1	chr7:99608999-99609247	XLOC_006188

No data

Variant related genes	Relation type
AZGP1	TF binding region
ZKSCAN1	TF binding region
ENSG00000235713	TF binding region
AZGP1P1	TF binding region
AZGP1	CpG island
ZKSCAN1	CpG island
ENSG00000235713	CpG island
AZGP1P1	CpG island
ENSG00000221838	chromatin interactions
ENSG00000108106	chromatin interactions
ENSG00000197153	chromatin interactions
ENSG00000166508	chromatin interactions
ENSG00000176402	chromatin interactions
ENSG00000166526	chromatin interactions
ENSG00000197037	chromatin interactions
ENSG00000237640	chromatin interactions
ENSG00000168090	chromatin interactions
ENSG00000166529	chromatin interactions
ENSG00000242798	chromatin interactions
ENSG00000200169	chromatin interactions
ENSG00000235077	chromatin interactions
ENSG00000106261	chromatin interactions
ENSG00000137154	chromatin interactions
ENSG00000214309	chromatin interactions
ENSG00000214252	chromatin interactions
ENSG00000106290	chromatin interactions
ENSG00000166997	chromatin interactions
ENSG00000160862	chromatin interactions
ENSG00000051108	chromatin interactions
ENSG00000146833	chromatin interactions
ENSG00000146826	chromatin interactions
ENSG00000235713	chromatin interactions
ENSG00000272373	chromatin interactions
ENSG00000196693	chromatin interactions
ENSG00000272888	chromatin interactions
C11orf82	miRNA target sites
ARSJ	miRNA target sites
ASCC2	miRNA target sites
NUP153	miRNA target sites
TMEM45A	miRNA target sites
KCTD15	miRNA target sites
BRD1	miRNA target sites

Extended variants
information (count: 2462 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:2462 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139603042	chr7:99564107-99564108	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573878508	chr7:99564114-99564115	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182564509	chr7:99564118-99564119	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs187223491	chr7:99564180-99564181	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149780719	chr7:99564234-99564235	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548293523	chr7:99564260-99564261	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569810943	chr7:99564309-99564310	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112822624	chr7:99564352-99564353	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs531127137	chr7:99564379-99564380	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs552760615	chr7:99564385-99564386	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571038450	chr7:99564388-99564389	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs534977463	chr7:99564398-99564399	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553655786	chr7:99564405-99564406	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs553897091	chr7:99564409-99564410	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192868685	chr7:99564412-99564413	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs185388203	chr7:99564416-99564417	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557031802	chr7:99564440-99564441	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370027921	chr7:99564455-99564456	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs575288620	chr7:99564461-99564462	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572208323	chr7:99564493-99564494	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188744857	chr7:99564506-99564507	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1804902	chr7:99564513-99564514	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs1804900	chr7:99564525-99564526	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1804901	chr7:99564529-99564530	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558297587	chr7:99564551-99564552	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576990221	chr7:99564561-99564562	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs1804903	chr7:99564562-99564563	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372335834	chr7:99564586-99564587	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs193215019	chr7:99564592-99564593	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs146780290	chr7:99564616-99564617	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs140635553	chr7:99564629-99564630	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201853922	chr7:99564630-99564631	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs41304197	chr7:99564640-99564641	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563280224	chr7:99564660-99564661	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184730682	chr7:99564668-99564669	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552321490	chr7:99564679-99564680	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs373646616	chr7:99564680-99564681	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs200354537	chr7:99564683-99564684	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs376472652	chr7:99564702-99564703	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145939335	chr7:99564706-99564707	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368483058	chr7:99564716-99564717	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201365001	chr7:99564736-99564737	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs570933446	chr7:99564760-99564761	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs199572012	chr7:99564772-99564773	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139788000	chr7:99564794-99564795	Active TSS Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372045467	chr7:99564819-99564820	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs143279151	chr7:99564870-99564871	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs112711529	chr7:99564933-99564934	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs377110545	chr7:99564935-99564936	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs188051315	chr7:99564936-99564937	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD

Chromatin state (count:2152 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99554000-99565000	Weak transcription	HepG2	liver
2	chr7:99562600-99573000	Weak transcription	Left Ventricle	heart
3	chr7:99563200-99567000	Strong transcription	Liver	Liver
4	chr7:99563400-99572800	Weak transcription	Brain Substantia Nigra	brain
5	chr7:99563400-99573000	Weak transcription	Gastric	stomach
6	chr7:99564000-99565600	Strong transcription	Pancreas	Pancrea
7	chr7:99564600-99564800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:99564800-99567600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:99565000-99565800	Strong transcription	HepG2	liver
10	chr7:99565400-99571600	Weak transcription	Adipose Nuclei	Adipose
11	chr7:99565600-99567600	Weak transcription	Pancreas	Pancrea
12	chr7:99565800-99568200	Weak transcription	HepG2	liver
13	chr7:99566000-99572400	Weak transcription	Right Ventricle	heart
14	chr7:99566800-99567000	Enhancers	Lung	lung
15	chr7:99567000-99569000	Weak transcription	Lung	lung
16	chr7:99567000-99570600	Genic enhancers	Liver	Liver
17	chr7:99567600-99567800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:99567600-99567800	Enhancers	Pancreas	Pancrea
19	chr7:99567800-99568200	Weak transcription	Pancreas	Pancrea
20	chr7:99567800-99578000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:99568200-99569600	Strong transcription	HepG2	liver
22	chr7:99568200-99570000	Genic enhancers	Pancreas	Pancrea
23	chr7:99568400-99568800	Weak transcription	Brain Anterior Caudate	brain
24	chr7:99569000-99569600	Enhancers	Lung	lung
25	chr7:99569600-99571600	Weak transcription	HepG2	liver
26	chr7:99570000-99570400	Enhancers	Pancreas	Pancrea
27	chr7:99570400-99572600	Weak transcription	Pancreas	Pancrea
28	chr7:99570600-99570800	Enhancers	Liver	Liver
29	chr7:99570800-99571400	Flanking Active TSS	Liver	Liver
30	chr7:99571400-99573800	Active TSS	Liver	Liver
31	chr7:99571600-99571800	Enhancers	Adipose Nuclei	Adipose
32	chr7:99571600-99572400	Enhancers	HepG2	liver
33	chr7:99571800-99572400	Weak transcription	Adipose Nuclei	Adipose
34	chr7:99572400-99572600	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr7:99572400-99572800	Flanking Active TSS	HepG2	liver
36	chr7:99572400-99573600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr7:99572400-99573600	Active TSS	Right Ventricle	heart
38	chr7:99572600-99573400	Active TSS	Adipose Nuclei	Adipose
39	chr7:99572600-99573800	Active TSS	Pancreas	Pancrea
40	chr7:99572800-99573800	Active TSS	HepG2	liver
41	chr7:99572800-99574000	Active TSS	Brain Substantia Nigra	brain
42	chr7:99572800-99574200	Enhancers	Brain Cingulate Gyrus	brain
43	chr7:99573000-99573600	Active TSS	Duodenum Mucosa	Duodenum
44	chr7:99573000-99573600	Active TSS	Left Ventricle	heart
45	chr7:99573000-99573800	Active TSS	Gastric	stomach
46	chr7:99573000-99574200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr7:99573400-99573800	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr7:99573400-99573800	Active TSS	Brain Anterior Caudate	brain
49	chr7:99573400-99574200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr7:99573400-99574400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links