Variant report

Variant	esv1826362
Chromosome Location	chr10:42783481-42803300
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-5	chr10:42794471-42794553	NONHSAT012863
2	lnc-BMS1-6	chr10:42791078-42791322	NONHSAT012862
3	lnc-CCNYL2-5	chr10:42796822-42796961	NONHSAT012863
4	lnc-CCNYL2-5	chr10:42795737-42796013	NONHSAT012863

Extended variants
information (count: 1529 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1529 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533454900	chr10:42790423-42790424	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs78507691	chr10:42790479-42790480	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs11238821	chr10:42790485-42790486	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs200356391	chr10:42790486-42790487	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201179942	chr10:42790488-42790489	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529428669	chr10:42790490-42790491	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs549525424	chr10:42790512-42790513	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7081776	chr10:42790513-42790514	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs74499251	chr10:42790516-42790517	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs139335733	chr10:42790551-42790552	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183002600	chr10:42790552-42790553	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs536356811	chr10:42790556-42790557	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs61853536	chr10:42790573-42790574	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs371051044	chr10:42790583-42790584	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs201194212	chr10:42790589-42790590	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs201339939	chr10:42790592-42790593	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs377695713	chr10:42790597-42790598	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs376762068	chr10:42790602-42790603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs199836726	chr10:42790604-42790605	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs371331477	chr10:42790609-42790610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs61853537	chr10:42790612-42790613	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs201308741	chr10:42790615-42790616	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs61853538	chr10:42790619-42790620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs200784194	chr10:42790620-42790621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs533808245	chr10:42790622-42790623	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs71014246	chr10:42790629-42790630	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs7095280	chr10:42790630-42790631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs199597942	chr10:42790648-42790649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs200994007	chr10:42790649-42790650	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs200055692	chr10:42790652-42790653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs28848528	chr10:42790657-42790658	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs200838354	chr10:42790672-42790673	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs553950906	chr10:42790685-42790686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs567323539	chr10:42790699-42790700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs536019229	chr10:42790719-42790720	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs376349423	chr10:42790721-42790722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs368150429	chr10:42790724-42790725	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs61853539	chr10:42790725-42790726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs558220653	chr10:42790741-42790742	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs61853540	chr10:42790744-42790745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs61853541	chr10:42790746-42790747	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs578207518	chr10:42790749-42790750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs61853542	chr10:42790750-42790751	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs28810214	chr10:42790752-42790753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs28822695	chr10:42790760-42790761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs28885435	chr10:42790762-42790763	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs61853543	chr10:42790775-42790776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs61853544	chr10:42790777-42790778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs61853545	chr10:42790789-42790790	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs181072206	chr10:42790797-42790798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:211 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42790400-42790600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr10:42790400-42818200	ZNF genes & repeats	Liver	Liver
3	chr10:42790600-42795200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
4	chr10:42790600-42795400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr10:42790600-42795400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
6	chr10:42790600-42818000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr10:42790600-42818000	ZNF genes & repeats	Brain Substantia Nigra	brain
8	chr10:42790600-42818000	ZNF genes & repeats	Colonic Mucosa	Colon
9	chr10:42790600-42818000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
10	chr10:42790600-42818000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr10:42790600-42818200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:42790600-42818200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:42790600-42818200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:42790600-42818200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr10:42790600-42818200	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr10:42790600-42818200	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr10:42790600-42818200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr10:42790600-42818400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr10:42790600-42818400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr10:42790600-42818400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:42790600-42818400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr10:42790600-42818600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:42790800-42792800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr10:42790800-42793200	ZNF genes & repeats	Fetal Heart	heart
25	chr10:42790800-42795200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
26	chr10:42790800-42795200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
27	chr10:42790800-42818000	ZNF genes & repeats	Brain Angular Gyrus	brain
28	chr10:42790800-42818000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr10:42790800-42818000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr10:42790800-42818000	ZNF genes & repeats	Dnd41	blood
31	chr10:42790800-42818200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr10:42790800-42818200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:42790800-42818200	ZNF genes & repeats	Primary B cells from cord blood	blood
34	chr10:42790800-42818200	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr10:42790800-42818200	ZNF genes & repeats	Colon Smooth Muscle	Colon
36	chr10:42790800-42818200	ZNF genes & repeats	Fetal Brain Male	brain
37	chr10:42790800-42818200	ZNF genes & repeats	Fetal Lung	lung
38	chr10:42790800-42818200	ZNF genes & repeats	Gastric	stomach
39	chr10:42791000-42791600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:42791000-42791600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
41	chr10:42791000-42791600	ZNF genes & repeats	Right Atrium	heart
42	chr10:42791000-42791800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:42791000-42791800	ZNF genes & repeats	Pancreas	Pancrea
44	chr10:42791000-42791800	ZNF genes & repeats	K562	blood
45	chr10:42791000-42791800	ZNF genes & repeats	NH-A	brain
46	chr10:42791000-42792000	ZNF genes & repeats	HepG2	liver
47	chr10:42791000-42792000	ZNF genes & repeats	HSMM	muscle
48	chr10:42791000-42792200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:42791000-42792600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
50	chr10:42791000-42792600	ZNF genes & repeats	Spleen	Spleen

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