Variant report

Variant	esv1826647
Chromosome Location	chr6:160937316-161079798
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:160940089..160942020-chr6:161411986..161414301,2	MCF-7	breast:
2	chr6:160940670..160941542-chr6:161088487..161089076,2	MCF-7	breast:
3	chr6:161004456..161005962-chr6:161009319..161011113,2	K562	blood:
4	chr6:160940535..160941592-chr6:161088101..161089900,7	K562	blood:
5	chr6:160284403..160284908-chr6:160954965..160955519,2	K562	blood:
6	chr6:160876699..160877379-chr6:160954968..160955609,2	K562	blood:
7	chr6:160941041..160942817-chr6:161087432..161089515,2	K562	blood:
8	chr6:161022530..161025379-chr6:161026133..161029753,3	K562	blood:
9	chr6:160940571..160941215-chr6:160954967..160955505,2	K562	blood:
10	chr6:160939489..160941375-chr6:160998330..161000013,2	K562	blood:
11	chr6:160940613..160941580-chr6:160954987..160955524,2	MCF-7	breast:
12	chr6:161022530..161025379-chr6:161026133..161029753,3	K562	blood:
13	chr6:160559138..160559777-chr6:160954950..160955755,2	K562	blood:
14	chr6:161019352..161022051-chr6:161023813..161026327,2	K562	blood:
15	chr6:160954972..160955719-chr6:161088699..161089595,2	MCF-7	breast:
16	chr6:160939583..160942817-chr6:161087432..161090286,3	K562	blood:
17	chr6:160940621..160941316-chr6:161413631..161414342,2	MCF-7	breast:
18	chr6:161004456..161005962-chr6:161009319..161011113,2	K562	blood:
19	chr6:160940613..160941580-chr6:160954987..160955524,2	MCF-7	breast:
20	chr6:161019352..161022051-chr6:161023813..161026327,2	K562	blood:
21	chr6:160940997..160941666-chr6:160999443..161000039,2	K562	blood:
22	chr6:160918427..160920098-chr6:160939899..160941930,2	K562	blood:
23	chr6:160475075..160476994-chr6:160939802..160942570,2	K562	blood:
24	chr6:160940571..160941215-chr6:160954967..160955505,2	K562	blood:
25	chr6:160939489..160941375-chr6:160998330..161000013,2	K562	blood:
26	chr6:160940997..160941666-chr6:160999443..161000039,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLG-2	chr6:161041576-161041654	NONHSAT115908
2	lnc-PLG-2	chr6:161039310-161039522	NONHSAT115908

No data

Variant related genes	Relation type
ENSG00000085511	chromatin interactions
ENSG00000272841	chromatin interactions

Extended variants
information (count: 5329 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:5329 , 50 per page) page: 1 2 3 4 5 6 7 ... 107

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555963869	chr6:160937336-160937337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs372450873	chr6:160937342-160937343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141256988	chr6:160937372-160937373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146963053	chr6:160937414-160937415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111493053	chr6:160937493-160937494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs572678796	chr6:160937509-160937510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs116717189	chr6:160937516-160937517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs112633390	chr6:160937539-160937540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111486018	chr6:160937554-160937555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs113765675	chr6:160937586-160937587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs147709027	chr6:160937598-160937599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs577952276	chr6:160937609-160937610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7742018	chr6:160937622-160937623	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs190006193	chr6:160937635-160937636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs551300082	chr6:160937642-160937643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562770903	chr6:160937653-160937654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs79574849	chr6:160937658-160937659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529315559	chr6:160937659-160937660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142541201	chr6:160937663-160937664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs192133184	chr6:160937690-160937691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143392828	chr6:160937704-160937705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148387730	chr6:160937731-160937732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs570751704	chr6:160937752-160937753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs560822926	chr6:160937763-160937764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150410859	chr6:160937799-160937800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs569690634	chr6:160937808-160937809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535493445	chr6:160937873-160937874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs138241275	chr6:160937890-160937891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142827503	chr6:160937908-160937909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535265417	chr6:160937910-160937911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146093756	chr6:160937933-160937934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs542843903	chr6:160937937-160937938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543777840	chr6:160937954-160937955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs139252997	chr6:160937964-160937965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573702657	chr6:160937967-160937968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112794061	chr6:160937972-160937973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184348948	chr6:160937973-160937974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs189101727	chr6:160937974-160937975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572833333	chr6:160937976-160937977	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs527491990	chr6:160937990-160937991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs386707830	chr6:160938035-160938036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs149522055	chr6:160938036-160938037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369914117	chr6:160938038-160938039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs116478304	chr6:160938047-160938048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563231896	chr6:160938053-160938054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs528935130	chr6:160938077-160938078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185781005	chr6:160938093-160938094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565805773	chr6:160938114-160938115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs113269661	chr6:160938128-160938129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs189094833	chr6:160938131-160938132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Coronary artery disease	17160897	CNVD
Chordoma	18071362	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Coronary Disease	20032323	CNVD
Coronary Disease	20335594	CNVD
Breast cancer	22522925	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Recurrent pregnancy loss	19789632	CNVD
Autism	21865298	CNVD
Schizophrenia	23813976	CNVD
Carotid artery disease	21127300	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD

Chromatin state (count:528 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160933600-160940400	Weak transcription	Liver	Liver
2	chr6:160934600-160941000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:160935200-160940200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:160935200-160940600	Weak transcription	HepG2	liver
5	chr6:160935200-160941000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:160938600-160941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:160938800-160940400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:160939200-160939400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:160939200-160939600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:160939200-160939600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:160939200-160939800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:160939200-160940600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:160939200-160940600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:160939400-160939600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:160939400-160940000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:160939400-160940600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:160939600-160940000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:160939600-160940000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:160939600-160940800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:160939800-160940400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:160939800-160940400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:160940000-160940200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:160940000-160940200	Enhancers	A549	lung
24	chr6:160940000-160940600	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:160940000-160940600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:160940000-160940800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:160940200-160940400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:160940200-160940400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:160940200-160940400	Enhancers	K562	blood
30	chr6:160940200-160940600	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr6:160940200-160940600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:160940200-160940600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr6:160940200-160940800	Enhancers	Brain Anterior Caudate	brain
34	chr6:160940200-160940800	Enhancers	Fetal Muscle Trunk	muscle
35	chr6:160940200-160942000	Active TSS	A549	lung
36	chr6:160940400-160940600	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr6:160940400-160940600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:160940400-160940600	Enhancers	NHEK	skin
39	chr6:160940400-160940800	Bivalent Enhancer	Primary T cells from cord blood	blood
40	chr6:160940400-160940800	Active TSS	Primary hematopoietic stem cells short term culture	blood
41	chr6:160940400-160940800	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr6:160940400-160940800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr6:160940400-160940800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:160940400-160940800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:160940400-160940800	Enhancers	Liver	Liver
46	chr6:160940400-160940800	Weak transcription	K562	blood
47	chr6:160940400-160941000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:160940400-160941200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr6:160940400-160941800	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr6:160940400-160941800	Active TSS	HUES64 Cell Line	embryonic stem cell

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