Variant report

Variant	esv1828583
Chromosome Location	chr7:100652181-100676353
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:531)
CpG islands
(count:610)
Chromatin interactive
region (count:16)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:531 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr7:100661797-100662462	GM12878	blood:	n/a	n/a
2	ATF2	chr7:100660727-100661099	GM12878	blood:	n/a	n/a
3	ATF2	chr7:100660670-100661107	GM12878	blood:	n/a	n/a
4	ATF3	chr7:100660800-100661128	K562	blood:	n/a	n/a
5	ATF3	chr7:100660850-100661016	K562	blood:	n/a	n/a
6	ATF3	chr7:100660660-100661103	A549	lung:	n/a	n/a
7	ATF3	chr7:100660675-100661110	A549	lung:	n/a	n/a
8	BACH1	chr7:100660799-100660996	K562	blood:	n/a	n/a
9	BACH1	chr7:100660771-100661027	H1-hESC	embryonic stem cell:	n/a	n/a
10	BATF	chr7:100660711-100661146	GM12878	blood:	n/a	n/a
11	BATF	chr7:100662051-100662382	GM12878	blood:	n/a	n/a
12	BATF	chr7:100661967-100662417	GM12878	blood:	n/a	n/a
13	BATF	chr7:100660816-100661103	GM12878	blood:	n/a	n/a
14	BCL11A	chr7:100660848-100661165	GM12878	blood:	n/a	n/a
15	BCL11A	chr7:100660767-100661112	GM12878	blood:	n/a	n/a
16	BCL11A	chr7:100661969-100662354	GM12878	blood:	n/a	chr7:100662223-100662232
17	BCL3	chr7:100660242-100661162	A549	lung:	n/a	n/a
18	BCL3	chr7:100660552-100661086	A549	lung:	n/a	n/a
19	BCL3	chr7:100660686-100661198	GM12878	blood:	n/a	n/a
20	BCLAF1	chr7:100661927-100662319	GM12878	blood:	n/a	chr7:100662223-100662232
21	BHLHE40	chr7:100660843-100660996	HepG2	liver:	n/a	n/a
22	BHLHE40	chr7:100660870-100660995	K562	blood:	n/a	n/a
23	BHLHE40	chr7:100660487-100660610	K562	blood:	n/a	n/a
24	BHLHE40	chr7:100660484-100661125	GM12878	blood:	n/a	n/a
25	BHLHE40	chr7:100661909-100662190	GM12878	blood:	n/a	n/a
26	BRCA1	chr7:100660746-100660924	HepG2	liver:	n/a	n/a
27	BRCA1	chr7:100674476-100674702	H1-hESC	embryonic stem cell:	n/a	n/a
28	CBX3	chr7:100660230-100661139	K562	blood:	n/a	n/a
29	CCNT2	chr7:100660408-100660966	K562	blood:	n/a	n/a
30	CEBPB	chr7:100670930-100671303	MCF-7	breast:	n/a	chr7:100671108-100671119
31	CEBPB	chr7:100671056-100671235	A549	lung:	n/a	chr7:100671108-100671119
32	CEBPB	chr7:100671023-100671195	K562	blood:	n/a	chr7:100671108-100671119
33	CEBPB	chr7:100660442-100660626	GM12878	blood:	n/a	n/a
34	CEBPB	chr7:100653277-100653286	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chr7:100671065-100671163	H1-hESC	embryonic stem cell:	n/a	chr7:100671108-100671119
36	CEBPB	chr7:100671058-100671196	HepG2	liver:	n/a	chr7:100671108-100671119
37	CEBPB	chr7:100653204-100653373	K562	blood:	n/a	chr7:100653275-100653288
38	CHD1	chr7:100659894-100661148	IMR90	lung:	n/a	n/a
39	CHD2	chr7:100660723-100661074	GM12878	blood:	n/a	n/a
40	CHD2	chr7:100660467-100660666	H1-hESC	embryonic stem cell:	n/a	n/a
41	CHD2	chr7:100662193-100662373	GM12878	blood:	n/a	n/a
42	CHD2	chr7:100661545-100661745	H1-hESC	embryonic stem cell:	n/a	n/a
43	CREB1	chr7:100660378-100661115	GM12878	blood:	n/a	n/a
44	CREB1	chr7:100660703-100661024	A549	lung:	n/a	n/a
45	CTBP2	chr7:100659966-100661045	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTBP2	chr7:100661493-100662331	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr7:100674496-100674629	MCF-7	breast:	n/a	n/a
48	CTCF	chr7:100674480-100674630	GM12873	blood:	n/a	n/a
49	CTCF	chr7:100674492-100674649	A549	lung:	n/a	n/a
50	CTCF	chr7:100674420-100674570	GM12875	blood:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:100660545-100660595	PFSK-1	brain:	n/a
2	chr7:100660909-100660959	HCPEpiC	choroid plexus:	n/a
3	chr7:100660545-100660595	SK-N-MC	brain:	n/a
4	chr7:100663185-100663235	HEK293	kidney:	embryo
5	chr7:100663367-100663417	IMR90	lung:	fetal
6	chr7:100660595-100660645	Jurkat	blood:	n/a
7	chr7:100660494-100660544	GM12891	blood:	n/a
8	chr7:100660494-100660544	NHDF-neo	bronchial:	n/a
9	chr7:100660494-100660544	Hepatocyte	liver:	n/a
10	chr7:100661991-100662041	Caco-2	colon:	n/a
11	chr7:100663367-100663417	HEEpiC	esophagus:	n/a
12	chr7:100660494-100660544	H1-hESC	embryonic stem cell:	embryo
13	chr7:100660545-100660595	MCF10A-Er-Src	breast:	n/a
14	chr7:100660909-100660959	T-47D	breast:	n/a
15	chr7:100662570-100662620	K562	blood:	n/a
16	chr7:100663239-100663289	Hepatocyte	liver:	n/a
17	chr7:100662570-100662620	GM12878	blood:	n/a
18	chr7:100663367-100663417	MCF10A-Er-Src	breast:	n/a
19	chr7:100660494-100660544	HCPEpiC	choroid plexus:	n/a
20	chr7:100663185-100663235	GM12878	blood:	n/a
21	chr7:100661996-100662046	HepG2	liver:	n/a
22	chr7:100660494-100660544	Jurkat	blood:	n/a
23	chr7:100663367-100663417	CMK	blood:	n/a
24	chr7:100663367-100663417	SK-N-MC	brain:	n/a
25	chr7:100661996-100662046	HIPEpiC	eye:	n/a
26	chr7:100660595-100660645	HIPEpiC	eye:	n/a
27	chr7:100660494-100660544	GM12892	blood:	n/a
28	chr7:100663367-100663417	HCT-116	colon:	n/a
29	chr7:100663239-100663289	BJ	skin:	n/a
30	chr7:100663367-100663417	Jurkat	blood:	n/a
31	chr7:100663185-100663235	HepG2	liver:	n/a
32	chr7:100660595-100660645	GM06990	blood:	n/a
33	chr7:100661991-100662041	GM12892	blood:	n/a
34	chr7:100660545-100660595	HL-60	blood:	n/a
35	chr7:100660545-100660595	SAEC	small airway:	n/a
36	chr7:100660909-100660959	K562	blood:	n/a
37	chr7:100661991-100662041	HPAEpiC	pulmonary alveolar:	n/a
38	chr7:100660545-100660595	GM12891	blood:	n/a
39	chr7:100660545-100660595	T-47D	breast:	n/a
40	chr7:100662570-100662620	PFSK-1	brain:	n/a
41	chr7:100663239-100663289	K562	blood:	n/a
42	chr7:100660909-100660959	AG09309	skin:	n/a
43	chr7:100662570-100662620	NH-A	brain:	n/a
44	chr7:100661991-100662041	HRE	kidney:	n/a
45	chr7:100660595-100660645	SK-N-MC	brain:	n/a
46	chr7:100663367-100663417	LNCaP	prostate:	n/a
47	chr7:100660545-100660595	GM19239	blood:	n/a
48	chr7:100660595-100660645	PANC-1	pancreas:	n/a
49	chr7:100660494-100660544	HAEpiC	amniotic membrane:	n/a
50	chr7:100660545-100660595	HMEC	breast:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100661599..100663275-chr7:100811718..100814144,2	K562	blood:
2	chr7:100651695..100653589-chr7:100673839..100675756,2	MCF-7	breast:
3	chr7:100663659..100665527-chr7:100686154..100687748,2	K562	blood:
4	chr7:100608767..100609716-chr7:100660411..100661061,2	K562	blood:
5	chr7:100660835..100663143-chr7:100672938..100674954,2	K562	blood:
6	chr7:100650929..100652882-chr7:100660987..100663735,2	K562	blood:
7	chr7:100651588..100653304-chr7:100658746..100661448,2	K562	blood:
8	chr7:100648211..100651401-chr7:100653251..100655813,3	K562	blood:
9	chr7:100486083..100488238-chr7:100659648..100662388,2	MCF-7	breast:
10	chr7:100462781..100465423-chr7:100657982..100660007,2	MCF-7	breast:
11	chr7:100673454..100676162-chr7:100684311..100686257,2	MCF-7	breast:
12	chr7:100486496..100489438-chr7:100663883..100665866,2	MCF-7	breast:
13	chr7:100606234..100609871-chr7:100659072..100662376,5	K562	blood:
14	chr7:100609315..100609838-chr7:100674119..100674688,2	MCF-7	breast:
15	chr7:100651695..100653589-chr7:100673839..100675756,2	MCF-7	breast:
16	chr7:100609382..100610920-chr7:100667758..100669806,2	MCF-7	breast:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC17-1	chr7:100661876-100662217	NONHSAT122438
2	lnc-VGF-2	chr7:100665373-100665608	expReg_chr7_6684_-
3	lnc-MUC17-1	chr7:100660856-100660944	NONHSAT122438
4	lnc-VGF-1	chr7:100658479-100658571	ENSG00000227053.1
5	lnc-MUC17-1	chr7:100661876-100662220	NONHSAT122439
6	lnc-VGF-1	chr7:100660696-100660882	ENSG00000227053.1
7	lnc-VGF-1	chr7:100660696-100660889	ENSG00000227053.1
8	lnc-VGF-1	chr7:100657606-100657720	ENSG00000227053.1
9	lnc-VGF-1	chr7:100658479-100658548	ENSG00000227053.1
10	lnc-VGF-1	chr7:100657601-100657720	ENSG00000227053.1
11	lnc-MUC17-1	chr7:100660615-100660944	NONHSAT122439
12	lnc-MUC17-1	chr7:100660544-100660678	NONHSAT122438

No data

Variant related genes	Relation type
MUC17	TF binding region
MUC12	TF binding region
ENSG00000227053	TF binding region
MUC17	CpG island
MUC12	CpG island
ENSG00000227053	CpG island
ENSG00000087077	chromatin interactions
ENSG00000169876	chromatin interactions
ENSG00000176125	chromatin interactions
ENSG00000227053	chromatin interactions
ENSG00000205277	chromatin interactions
ENSG00000169894	chromatin interactions
ENSG00000225946	chromatin interactions

Extended variants
information (count: 1019 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:1019 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12538004	chr7:100652181-100652182	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189356499	chr7:100652193-100652194	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs543682289	chr7:100652238-100652239	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs147754131	chr7:100652245-100652246	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs12540832	chr7:100652317-100652318	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs372936684	chr7:100652338-100652339	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs180758181	chr7:100652345-100652346	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs576869486	chr7:100652352-100652353	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs375004644	chr7:100652363-100652364	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs142500707	chr7:100652384-100652385	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs146817159	chr7:100652396-100652397	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs547857513	chr7:100652423-100652424	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs184112270	chr7:100652430-100652431	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs377748854	chr7:100652431-100652432	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs552402477	chr7:100652485-100652486	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs188409728	chr7:100652627-100652628	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs137962072	chr7:100652643-100652644	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs553016771	chr7:100652646-100652647	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs140780633	chr7:100652655-100652656	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs535875461	chr7:100652737-100652738	Weak transcription Strong transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs557067883	chr7:100652774-100652775	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs576332690	chr7:100652789-100652790	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs181600907	chr7:100652882-100652883	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs558792173	chr7:100652911-100652912	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs577075549	chr7:100652912-100652913	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs541147336	chr7:100652934-100652935	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs559428592	chr7:100652954-100652955	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs186537613	chr7:100652963-100652964	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs541853480	chr7:100653013-100653014	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs563135221	chr7:100653023-100653024	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs116332309	chr7:100653027-100653028	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs192322896	chr7:100653030-100653031	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs373478406	chr7:100653031-100653032	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs182289714	chr7:100653045-100653046	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs546773995	chr7:100653053-100653054	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs115602905	chr7:100653110-100653111	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs535574765	chr7:100653111-100653112	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs35388175	chr7:100653227-100653228	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs552342591	chr7:100653238-100653239	Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs374614341	chr7:100653319-100653320	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs150124045	chr7:100653326-100653327	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs558861304	chr7:100653352-100653353	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs74941631	chr7:100653433-100653434	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12672776	chr7:100653451-100653452	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs560471529	chr7:100653470-100653471	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113964059	chr7:100653505-100653506	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs117645739	chr7:100653508-100653509	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs189990690	chr7:100653593-100653594	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563304539	chr7:100653600-100653601	Weak transcription Bivalent Enhancer Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570492010	chr7:100653619-100653620	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Malignant melanoma	17260012	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	19435499	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	16608533	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Liver carcinoma	19366792	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Adenocarcinoma	19607727	CNVD
Multiple myeloma	16461302	CNVD
Breast cancer	21858162	CNVD
Emphysema	19352772	CNVD
Effusion lymphoma	18079361	CNVD
Medulloblastoma	17653508	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Autism	19401682	CNVD
Neuroticism	17667963	CNVD
Breast cancer	21509527	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Prostate cancer	18632612	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:567 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100635400-100660000	Weak transcription	Gastric	stomach
2	chr7:100635800-100660000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:100635800-100660200	Weak transcription	Right Atrium	heart
4	chr7:100643800-100655400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:100647800-100659000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr7:100647800-100660200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr7:100648800-100659000	Weak transcription	Spleen	Spleen
8	chr7:100650000-100657000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:100650600-100654600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:100650800-100654200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:100651000-100657000	Weak transcription	Fetal Stomach	stomach
12	chr7:100651000-100658800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:100651200-100652800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:100651400-100657000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:100651600-100652600	Strong transcription	Colonic Mucosa	Colon
16	chr7:100651600-100660000	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:100652000-100659200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:100652200-100654400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:100652200-100658800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:100652400-100656000	Weak transcription	Ovary	ovary
21	chr7:100652600-100655400	Weak transcription	Colonic Mucosa	Colon
22	chr7:100652600-100660000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:100652800-100653400	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr7:100652800-100654800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:100652800-100655000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:100653000-100655600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:100653400-100653600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:100653400-100654400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:100653400-100655000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:100653400-100659800	Weak transcription	NHLF	lung
31	chr7:100653600-100655400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:100653600-100659000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr7:100653600-100659200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:100653800-100656000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:100653800-100660000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:100653800-100660000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:100654000-100658600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:100654200-100658800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:100654200-100659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:100654400-100657600	Strong transcription	Placenta Amnion	Placenta Amnion
41	chr7:100654400-100658800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:100654400-100659200	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:100654600-100654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:100654800-100655400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:100654800-100655800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:100655000-100655800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:100655000-100657200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:100655200-100658800	Weak transcription	GM12878-XiMat	blood
49	chr7:100655200-100659800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr7:100655400-100656200	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links