Variant report

Variant	esv1828643
Chromosome Location	chr1:58744143-58747747
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:58740800..58743267-chr1:58744921..58746475,2	K562	blood:
2	chr1:58747692..58750339-chr1:58769742..58771808,2	MCF-7	breast:

Extended variants
information (count: 119 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:119 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370742211	chr1:58744393-58744394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs555340067	chr1:58744395-58744396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs190733402	chr1:58744568-58744569	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377179727	chr1:58744822-58744823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs575425691	chr1:58744921-58744922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs375046662	chr1:58744993-58744994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542886525	chr1:58745085-58745086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559551912	chr1:58745088-58745089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs117388414	chr1:58745146-58745147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569299400	chr1:58745192-58745193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs571238266	chr1:58745240-58745241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs79705891	chr1:58745258-58745259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557971760	chr1:58745260-58745261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573080541	chr1:58745285-58745286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114931499	chr1:58745309-58745310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs115853010	chr1:58745353-58745354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs535903582	chr1:58745354-58745355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs545696	chr1:58745403-58745404	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs147643026	chr1:58745429-58745430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs535000555	chr1:58745485-58745486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200621717	chr1:58745487-58745488	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182636433	chr1:58745493-58745494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs148750341	chr1:58745497-58745498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs76647950	chr1:58745517-58745518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs187602634	chr1:58745557-58745558	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs116797552	chr1:58745569-58745570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141923939	chr1:58745572-58745573	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs192856965	chr1:58745573-58745574	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543099043	chr1:58745579-58745580	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559612182	chr1:58745586-58745587	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs77925710	chr1:58745590-58745591	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs78419172	chr1:58745646-58745647	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77106890	chr1:58745647-58745648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543578314	chr1:58745683-58745684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs530831328	chr1:58745704-58745705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373997000	chr1:58745727-58745728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562229194	chr1:58745729-58745730	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550314425	chr1:58745781-58745782	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184233007	chr1:58745831-58745832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs573838638	chr1:58745833-58745834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs147923012	chr1:58745836-58745837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187463749	chr1:58745860-58745861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546253493	chr1:58745865-58745866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs28596479	chr1:58745888-58745889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367610993	chr1:58745931-58745932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs566212451	chr1:58745952-58745953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs534914274	chr1:58745958-58745959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551698182	chr1:58745977-58745978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs150093343	chr1:58745986-58745987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138430567	chr1:58746007-58746008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Papillary thyroid carcinoma	21436994	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Meckel-Gruber syndrome	21572526	CNVD
Breast cancer	16620391	CNVD
Multiple myeloma	16616336	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21509527	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58724000-58759600	Weak transcription	Ovary	ovary
2	chr1:58741800-58749600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:58745200-58745400	Weak transcription	Lung	lung
4	chr1:58745400-58745800	ZNF genes & repeats	Lung	lung
5	chr1:58747600-58747800	Bivalent Enhancer	Fetal Heart	heart
6	chr1:58747600-58750600	Enhancers	Fetal Brain Male	brain

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