Variant report

Variant	esv1831719
Chromosome Location	chr10:766556-784362
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:783561..786479-chr10:789093..790752,2	MCF-7	breast:
2	chr10:778218..778758-chr10:824666..825446,2	MCF-7	breast:
3	chr10:762176..765127-chr10:765238..767512,2	MCF-7	breast:
4	chr10:756021..758273-chr10:765053..767183,2	MCF-7	breast:
5	chr10:757872..760729-chr10:776939..779568,2	MCF-7	breast:
6	chr10:778218..778962-chr10:824579..825446,5	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf108-6	chr10:779932-779973	NONHSAT010872
2	lnc-C10orf108-6	chr10:780517-780898	NONHSAT010872

No data

Variant related genes	Relation type
ENSG00000231601	chromatin interactions

Extended variants
information (count: 1208 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1208 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs186701722	chr10:766566-766567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs11253352	chr10:766598-766599	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs528046311	chr10:766611-766612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192610795	chr10:766625-766626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs183937238	chr10:766634-766635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs531135874	chr10:766670-766671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144338273	chr10:766685-766686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188886028	chr10:766695-766696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs536344664	chr10:766696-766697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs114009675	chr10:766699-766700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566863537	chr10:766703-766704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs538991721	chr10:766706-766707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372188804	chr10:766723-766724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558704834	chr10:766765-766766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs577849073	chr10:766775-766776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547343725	chr10:766780-766781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs498447	chr10:766785-766786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs557187906	chr10:766788-766789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs573830990	chr10:766799-766800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542851444	chr10:766815-766816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs115048715	chr10:766825-766826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs11253353	chr10:766862-766863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs498690	chr10:766867-766868	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs531102449	chr10:766887-766888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs544553190	chr10:766902-766903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs114625873	chr10:766905-766906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7092691	chr10:766909-766910	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
28	rs816316	chr10:766995-766996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566931201	chr10:767009-767010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs532528806	chr10:767040-767041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs544765203	chr10:767063-767064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575650495	chr10:767085-767086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs147817400	chr10:767121-767122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192904529	chr10:767165-767166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs369172341	chr10:767183-767184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs537965008	chr10:767189-767190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184311072	chr10:767195-767196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs34694613	chr10:767197-767198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574541591	chr10:767203-767204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs141351923	chr10:767228-767229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540115880	chr10:767229-767230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs72776414	chr10:767235-767236	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs552919426	chr10:767248-767249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs572877943	chr10:767261-767262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376684642	chr10:767288-767289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs544816352	chr10:767321-767322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs816317	chr10:767329-767330	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs2066129	chr10:767343-767344	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs188718331	chr10:767357-767358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11253354	chr10:767369-767370	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:761000-768200	Weak transcription	Placenta	Placenta
2	chr10:761000-768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:764800-772000	Weak transcription	Right Atrium	heart
4	chr10:767800-768400	Weak transcription	Spleen	Spleen
5	chr10:768200-768600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:768200-769000	Enhancers	Placenta	Placenta
7	chr10:768400-768600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:768400-768600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:768400-768600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:768400-768600	Genic enhancers	Spleen	Spleen
11	chr10:768600-768800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:768600-770000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:768600-771400	Weak transcription	Spleen	Spleen
14	chr10:769000-771600	Weak transcription	Placenta	Placenta
15	chr10:770000-770200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:770000-770200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:770000-770400	Enhancers	Pancreas	Pancrea
18	chr10:770200-771800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:770800-771000	Weak transcription	Esophagus	oesophagus
20	chr10:770800-772200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:771400-771600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:771400-772200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:771400-772200	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr10:771400-772200	Enhancers	Fetal Muscle Trunk	muscle
25	chr10:771400-772200	Enhancers	Fetal Muscle Leg	muscle
26	chr10:771400-772200	Enhancers	Spleen	Spleen
27	chr10:771400-773000	Enhancers	Right Ventricle	heart
28	chr10:771600-771800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:771600-772000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:771600-772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:771600-774800	Enhancers	Placenta	Placenta
32	chr10:771800-772200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:771800-772400	Enhancers	Placenta Amnion	Placenta Amnion
34	chr10:772000-772200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:772000-772200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:772000-772200	Enhancers	Esophagus	oesophagus
37	chr10:772000-773400	Strong transcription	Right Atrium	heart
38	chr10:772200-772600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:772400-772800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:772600-773000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:772800-773200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr10:772800-773600	Enhancers	Placenta Amnion	Placenta Amnion
43	chr10:773000-775200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr10:773400-775200	Weak transcription	Right Atrium	heart
45	chr10:774600-774800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr10:774600-774800	Enhancers	Right Ventricle	heart
47	chr10:774600-775400	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr10:774600-775600	Enhancers	Duodenum Mucosa	Duodenum
49	chr10:775200-775400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:775400-775600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum

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