Variant report

Variant	esv1835596
Chromosome Location	chr7:150285801-150301569
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP6-1	chr7:150300649-150301732	NONHSAT124145

Extended variants
information (count: 984 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:984 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10240847	chr7:150285825-150285826	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs557703784	chr7:150285826-150285827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113459774	chr7:150285835-150285836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs189214842	chr7:150285843-150285844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558965376	chr7:150285845-150285846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536450671	chr7:150285898-150285899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192538457	chr7:150285910-150285911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74338129	chr7:150285922-150285923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs398067409	chr7:150285928-150285929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535060762	chr7:150285968-150285969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62502293	chr7:150285980-150285981	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs545125469	chr7:150286021-150286022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62502294	chr7:150286026-150286027	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs143262353	chr7:150286062-150286063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs369625102	chr7:150286101-150286102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149764090	chr7:150286110-150286111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62502295	chr7:150286138-150286139	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs560855785	chr7:150286160-150286161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs529950756	chr7:150286189-150286190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62502296	chr7:150286190-150286191	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs560335120	chr7:150286215-150286216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532190675	chr7:150286220-150286221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs62502297	chr7:150286229-150286230	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs184125888	chr7:150286265-150286266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs377474601	chr7:150286275-150286276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs146725011	chr7:150286277-150286278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs28765413	chr7:150286284-150286285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs567662143	chr7:150286290-150286291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs199580246	chr7:150286310-150286311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111384657	chr7:150286328-150286329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189644602	chr7:150286353-150286354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112309939	chr7:150286361-150286362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538827746	chr7:150286365-150286366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs62502298	chr7:150286398-150286399	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs536471868	chr7:150286415-150286416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs553958495	chr7:150286425-150286426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35817320	chr7:150286470-150286471	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs552469875	chr7:150286471-150286472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574342320	chr7:150286515-150286516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12671272	chr7:150286522-150286523	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs12671275	chr7:150286561-150286562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs532352715	chr7:150286570-150286571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545981137	chr7:150286571-150286572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs35556724	chr7:150286603-150286604	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs531074957	chr7:150286613-150286614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs551088735	chr7:150286621-150286622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs568058690	chr7:150286622-150286623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs374218759	chr7:150286623-150286624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181247516	chr7:150286639-150286640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs142024070	chr7:150286645-150286646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Adrenocortical carcinoma	18281524	CNVD

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150284600-150292000	Weak transcription	Right Atrium	heart
2	chr7:150285000-150287800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:150285000-150292000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:150285200-150288800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:150285200-150291800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:150285400-150287600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:150285400-150287800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:150287600-150288000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:150287800-150288200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr7:150287800-150288400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr7:150288800-150289000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr7:150290400-150290600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:150291000-150291200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr7:150291000-150292200	Enhancers	Spleen	Spleen
15	chr7:150291200-150291400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr7:150291200-150292000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr7:150291200-150292600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr7:150291200-150293200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:150291200-150293800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:150291400-150292600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr7:150291800-150292200	Enhancers	Left Ventricle	heart
22	chr7:150291800-150292600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr7:150291800-150292800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:150291800-150293000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:150291800-150293200	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr7:150291800-150293200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr7:150292000-150292200	Enhancers	Right Atrium	heart
28	chr7:150292000-150292200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:150292000-150292400	Enhancers	Adipose Nuclei	Adipose
30	chr7:150292000-150292600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:150292000-150292800	Enhancers	Primary T cells from cord blood	blood
32	chr7:150292000-150293000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:150292000-150293200	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr7:150292000-150293200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr7:150292000-150293200	Enhancers	HUVEC	blood vessel
36	chr7:150292200-150296200	Weak transcription	Right Atrium	heart
37	chr7:150292400-150293400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr7:150292600-150300200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr7:150293000-150300200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr7:150293200-150294200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:150293200-150300200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr7:150294200-150294400	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr7:150294400-150300200	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr7:150300200-150300600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr7:150300200-150300800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr7:150300200-150301000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr7:150300200-150301200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr7:150300200-150301400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:150300200-150301600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr7:150300200-150301800	Enhancers	Primary T cells from cord blood	blood

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