Variant report

Variant	esv1839612
Chromosome Location	chr10:38738541-38758114
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:610)
Chromatin interactive
region (count:0)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:38738701-38739205	HepG2	liver:	n/a	n/a
2	CEBPB	chr10:38738140-38738564	K562	blood:	n/a	n/a
3	CEBPB	chr10:38738721-38738938	K562	blood:	n/a	n/a
4	CEBPD	chr10:38754891-38755311	K562	blood:	n/a	n/a
5	CTCF	chr10:38741240-38741390	K562	blood:	n/a	n/a
6	CTCF	chr10:38741116-38741403	K562	blood:	n/a	n/a
7	CTCF	chr10:38741126-38741377	K562	blood:	n/a	n/a
8	CTCF	chr10:38741260-38741410	WERI-Rb-1	eye:	n/a	n/a
9	CTCF	chr10:38741150-38741574	K562	blood:	n/a	n/a
10	CTCF	chr10:38739802-38739881	Spleen_OC	spleen:	n/a	n/a
11	FOSL2	chr10:38738667-38739188	HepG2	liver:	n/a	n/a
12	FOSL2	chr10:38738276-38738580	HepG2	liver:	n/a	n/a
13	GATA2	chr10:38754883-38755200	K562	blood:	n/a	n/a
14	JUND	chr10:38743337-38743478	HepG2	liver:	n/a	n/a
15	NR2F2	chr10:38738107-38738612	K562	blood:	n/a	n/a
16	NR2F2	chr10:38739168-38739414	K562	blood:	n/a	n/a
17	NR2F2	chr10:38754886-38755134	K562	blood:	n/a	n/a
18	NR2F2	chr10:38738148-38738556	K562	blood:	n/a	n/a
19	NR3C1	chr10:38751653-38751855	A549	lung:	n/a	n/a
20	POLR2A	chr10:38741874-38742129	K562	blood:	n/a	n/a
21	POLR2A	chr10:38743274-38743541	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr10:38743354-38743642	GM12878	blood:	n/a	n/a
23	POLR2A	chr10:38739358-38739643	K562	blood:	n/a	n/a
24	POLR2A	chr10:38743215-38743703	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:38742645-38742675	K562	blood:	n/a	n/a
26	POLR2A	chr10:38743160-38743314	Hela-S3	cervix:	n/a	n/a
27	RXRA	chr10:38738699-38738921	HepG2	liver:	n/a	n/a
28	RXRA	chr10:38738218-38738541	HepG2	liver:	n/a	n/a
29	SP1	chr10:38738660-38739230	HepG2	liver:	n/a	n/a
30	SP1	chr10:38737926-38738590	HepG2	liver:	n/a	n/a
31	STAT5A	chr10:38754795-38755243	K562	blood:	n/a	n/a
32	TCF3	chr10:38738173-38738560	GM12878	blood:	n/a	n/a
33	USF1	chr10:38742376-38742527	HepG2	liver:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:38738941-38738991	NT2-D1	testis:	n/a
2	chr10:38738647-38738697	HMEC	breast:	n/a
3	chr10:38739849-38739899	HCT-116	colon:	n/a
4	chr10:38739819-38739869	AG09309	skin:	n/a
5	chr10:38739819-38739869	HEEpiC	esophagus:	n/a
6	chr10:38743472-38743522	MCF-7	breast:	n/a
7	chr10:38740319-38740369	HCT-116	colon:	n/a
8	chr10:38738647-38738697	BJ	skin:	n/a
9	chr10:38740029-38740079	A549	lung:	n/a
10	chr10:38739478-38739528	HCT-116	colon:	n/a
11	chr10:38738647-38738697	HL-60	blood:	n/a
12	chr10:38739506-38739556	K562	blood:	n/a
13	chr10:38739506-38739556	NH-A	brain:	n/a
14	chr10:38740029-38740079	HRPEpiC	eye:	n/a
15	chr10:38739885-38739935	SK-N-MC	brain:	n/a
16	chr10:38739478-38739528	Hepatocyte	liver:	n/a
17	chr10:38743472-38743522	NT2-D1	testis:	n/a
18	chr10:38739506-38739556	AG10803	skin:	n/a
19	chr10:38739819-38739869	K562	blood:	n/a
20	chr10:38738941-38738991	CMK	blood:	n/a
21	chr10:38739506-38739556	IMR90	lung:	fetal
22	chr10:38743472-38743522	Jurkat	blood:	n/a
23	chr10:38743472-38743522	HCM	heart:	n/a
24	chr10:38739478-38739528	Hela-S3	cervix:	n/a
25	chr10:38743472-38743522	HRCEpiC	kidney:	n/a
26	chr10:38738647-38738697	IMR90	lung:	fetal
27	chr10:38740319-38740369	GM06990	blood:	n/a
28	chr10:38739849-38739899	K562	blood:	n/a
29	chr10:38740029-38740079	Jurkat	blood:	n/a
30	chr10:38739478-38739528	AG04450	lung:	fetal
31	chr10:38743472-38743522	H1-hESC	embryonic stem cell:	embryo
32	chr10:38739819-38739869	HRCEpiC	kidney:	n/a
33	chr10:38738941-38738991	NHBE	bronchial:	n/a
34	chr10:38739819-38739869	HPAEpiC	pulmonary alveolar:	n/a
35	chr10:38739849-38739899	SAEC	small airway:	n/a
36	chr10:38739478-38739528	SK-N-SH_RA	brain:	n/a
37	chr10:38743472-38743522	Hepatocyte	liver:	n/a
38	chr10:38739885-38739935	GM19239	blood:	n/a
39	chr10:38740319-38740369	GM12892	blood:	n/a
40	chr10:38739478-38739528	GM12878	blood:	n/a
41	chr10:38738941-38738991	LNCaP	prostate:	n/a
42	chr10:38743472-38743522	RPTEC	kidney:	n/a
43	chr10:38739885-38739935	HCPEpiC	choroid plexus:	n/a
44	chr10:38740029-38740079	NHDF-neo	bronchial:	n/a
45	chr10:38738647-38738697	AG09319	gingival:	n/a
46	chr10:38739849-38739899	AG10803	skin:	n/a
47	chr10:38738941-38738991	AG04450	lung:	fetal
48	chr10:38739819-38739869	RPTEC	kidney:	n/a
49	chr10:38739849-38739899	HepG2	liver:	n/a
50	chr10:38739819-38739869	NHBE	bronchial:	n/a

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-4	chr10:38754897-38755104	ENSG00000203496.4
2	lnc-ZNF37A-4	chr10:38746609-38746777	ENSG00000203496.4
3	lnc-ZNF37A-4	chr10:38742109-38742458	ENSG00000203496
4	lnc-ZNF37A-4	chr10:38746609-38746777	ENSG00000203496
5	lnc-ZNF37A-4	chr10:38742109-38742458	ENSG00000203496.4
6	lnc-ZNF37A-4	chr10:38754897-38755311	ENSG00000203496

No data

Variant related genes	Relation type
CICP9	TF binding region
ENSG00000203496	TF binding region
CICP9	CpG island
ENSG00000203496	CpG island

Extended variants
information (count: 402 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:402 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28448770	chr10:38738541-38738542	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs78418718	chr10:38738542-38738543	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs552186753	chr10:38738546-38738547	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs182779320	chr10:38738552-38738553	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs374152556	chr10:38738559-38738560	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs78546010	chr10:38738560-38738561	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs78700023	chr10:38738561-38738562	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs79295494	chr10:38738578-38738579	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs77763014	chr10:38738588-38738589	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs186906982	chr10:38738599-38738600	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs76828495	chr10:38738609-38738610	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs77519463	chr10:38738610-38738611	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs76208708	chr10:38738620-38738621	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs548085491	chr10:38738624-38738625	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375646270	chr10:38738627-38738628	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201048200	chr10:38738635-38738636	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567966022	chr10:38738648-38738649	ZNF genes & repeats Weak transcription Strong transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
18	rs536891215	chr10:38738653-38738654	ZNF genes & repeats Weak transcription Strong transcription	CpG island	1 gene(s)	Overlapped CNVs	n/a
19	rs550350157	chr10:38738660-38738661	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
20	rs570166360	chr10:38738665-38738666	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
21	rs17595557	chr10:38738669-38738670	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
22	rs538734730	chr10:38738675-38738676	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
23	rs556910403	chr10:38738683-38738684	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
24	rs17595564	chr10:38738707-38738708	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs190139327	chr10:38738709-38738710	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs17595571	chr10:38738725-38738726	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs534976770	chr10:38738755-38738756	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs17611475	chr10:38738756-38738757	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs17611482	chr10:38738767-38738768	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs17611489	chr10:38738775-38738776	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs555306120	chr10:38738780-38738781	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs575208535	chr10:38738781-38738782	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs544071109	chr10:38738782-38738783	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs563859585	chr10:38738787-38738788	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs576902399	chr10:38738803-38738804	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs28403267	chr10:38738806-38738807	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs372396507	chr10:38738816-38738817	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs17611496	chr10:38738823-38738824	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs17595578	chr10:38738824-38738825	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs17595584	chr10:38738855-38738856	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs76435993	chr10:38738865-38738866	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs559355589	chr10:38738879-38738880	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs528075069	chr10:38738882-38738883	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs17595591	chr10:38738885-38738886	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs372028593	chr10:38738904-38738905	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs547777990	chr10:38738905-38738906	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs375178312	chr10:38738912-38738913	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs561686116	chr10:38738921-38738922	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs530698083	chr10:38738922-38738923	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs17595598	chr10:38738934-38738935	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38692200-38741000	Weak transcription	Aorta	Aorta
2	chr10:38692400-38739600	Weak transcription	Gastric	stomach
3	chr10:38692800-38741200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:38693000-38739200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:38698600-38738800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:38700200-38739600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:38707600-38738800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr10:38711200-38739600	Weak transcription	Adipose Nuclei	Adipose
9	chr10:38723400-38739400	Weak transcription	Brain Angular Gyrus	brain
10	chr10:38724800-38739600	Weak transcription	Fetal Lung	lung
11	chr10:38725000-38739000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:38725400-38739000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:38726400-38739400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:38727800-38740600	Weak transcription	Psoas Muscle	Psoas
15	chr10:38731400-38739200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:38733400-38739600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:38733800-38739200	Weak transcription	Dnd41	blood
18	chr10:38734400-38740000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:38735400-38739600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:38736200-38738600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:38736600-38738800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:38736600-38739200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:38736800-38738600	Strong transcription	Pancreas	Pancrea
24	chr10:38736800-38738800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:38736800-38738800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr10:38736800-38738800	Strong transcription	Thymus	Thymus
27	chr10:38736800-38739000	Strong transcription	Lung	lung
28	chr10:38736800-38740600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:38737000-38739400	Weak transcription	NHLF	lung
30	chr10:38737200-38739000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:38737200-38739800	Strong transcription	Brain Hippocampus Middle	brain
32	chr10:38737200-38739800	ZNF genes & repeats	Fetal Stomach	stomach
33	chr10:38737200-38740400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:38737400-38738600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:38737400-38738600	ZNF genes & repeats	Brain Germinal Matrix	brain
36	chr10:38737400-38738800	ZNF genes & repeats	Fetal Intestine Large	intestine
37	chr10:38737600-38739200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:38737800-38738600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr10:38737800-38738600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:38737800-38739200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:38737800-38739400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:38737800-38739600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
43	chr10:38738000-38738600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
44	chr10:38738000-38739600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:38738000-38739600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:38738000-38739600	Weak transcription	Placenta	Placenta
47	chr10:38738200-38739800	Weak transcription	Primary T cells from cord blood	blood
48	chr10:38738200-38739800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:38738200-38739800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:38738400-38739400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links