Variant report
Variant | esv1843648 |
---|---|
Chromosome Location | chr16:32433632-33387574 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:6312)
- CpG islands (count:3910)
- Chromatin interactive region (count:8)
- LncRNA region (count:75)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr16:32590243-32590613 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr16:32818363-32818754 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr16:32547652-32548159 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr16:32817100-32817669 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr16:32876710-32876890 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr16:32817496-32817662 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr16:33293788-33294209 | HepG2 | liver: | n/a | n/a |
8 | ARID3A | chr16:32657798-32657972 | HepG2 | liver: | n/a | n/a |
9 | ARID3A | chr16:32655940-32657281 | HepG2 | liver: | n/a | n/a |
10 | ATF1 | chr16:32549843-32550009 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr16:32558594-32558903 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr16:32832855-32832989 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr16:32526924-32527721 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr16:32547497-32547620 | K562 | blood: | n/a | n/a |
15 | ATF1 | chr16:32550785-32551178 | K562 | blood: | n/a | n/a |
16 | ATF1 | chr16:32559923-32560294 | K562 | blood: | n/a | n/a |
17 | ATF1 | chr16:32873309-32873509 | K562 | blood: | n/a | n/a |
18 | ATF1 | chr16:32583782-32583972 | K562 | blood: | n/a | n/a |
19 | ATF1 | chr16:32521319-32521519 | K562 | blood: | n/a | n/a |
20 | ATF1 | chr16:32568174-32568349 | K562 | blood: | n/a | n/a |
21 | ATF1 | chr16:32515726-32516011 | K562 | blood: | n/a | n/a |
22 | ATF3 | chr16:33293710-33294426 | HepG2 | liver: | n/a | n/a |
23 | ATF3 | chr16:33240952-33241267 | HepG2 | liver: | n/a | n/a |
24 | ATF3 | chr16:32909214-32909368 | K562 | blood: | n/a | n/a |
25 | ATF3 | chr16:32993758-32993903 | K562 | blood: | n/a | n/a |
26 | ATF3 | chr16:32876765-32876921 | K562 | blood: | n/a | n/a |
27 | BACH1 | chr16:32590237-32590618 | K562 | blood: | n/a | n/a |
28 | BACH1 | chr16:32553830-32554374 | K562 | blood: | n/a | n/a |
29 | BACH1 | chr16:32531668-32531907 | K562 | blood: | n/a | n/a |
30 | BACH1 | chr16:32639174-32639436 | H1-hESC | embryonic stem cell: | n/a | n/a |
31 | BACH1 | chr16:33293845-33294023 | K562 | blood: | n/a | n/a |
32 | BATF | chr16:33364185-33364651 | GM12878 | blood: | n/a | chr16:33364440-33364451 |
33 | BATF | chr16:32847350-32847649 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr16:33002452-33002671 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr16:33077153-33077342 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr16:33002463-33002715 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr16:33046034-33046402 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr16:33042313-33042791 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr16:32805422-32805612 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr16:32805420-32805638 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr16:32652782-32652951 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr16:32944783-32945170 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr16:33020846-33021096 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr16:32909165-32909547 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr16:33041862-33042137 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr16:33358267-33358522 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr16:33331077-33331251 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr16:33370078-33370545 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr16:33042432-33043800 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr16:32848099-32848439 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:33317852-33317902 | AG04450 | lung: | fetal |
2 | chr16:33374131-33374181 | ECC-1 | luminal epithelium: | n/a |
3 | chr16:32823584-32823634 | A549 | lung: | n/a |
4 | chr16:32857872-32857922 | HPAEpiC | pulmonary alveolar: | n/a |
5 | chr16:32662543-32662593 | NHBE | bronchial: | n/a |
6 | chr16:32857923-32857973 | IMR90 | lung: | fetal |
7 | chr16:33317852-33317902 | AG04450 | lung: | fetal |
8 | chr16:33374131-33374181 | ECC-1 | luminal epithelium: | n/a |
9 | chr16:32823584-32823634 | A549 | lung: | n/a |
10 | chr16:32857872-32857922 | HPAEpiC | pulmonary alveolar: | n/a |
11 | chr16:32662543-32662593 | NHBE | bronchial: | n/a |
12 | chr16:32857923-32857973 | IMR90 | lung: | fetal |
13 | chr16:32452725-32452775 | SK-N-MC | brain: | n/a |
14 | chr16:33357151-33357201 | Hepatocyte | liver: | n/a |
15 | chr16:33317852-33317902 | H1-hESC | embryonic stem cell: | embryo |
16 | chr16:33040206-33040256 | HNPCEpiC | eye: | n/a |
17 | chr16:32857007-32857057 | HRPEpiC | eye: | n/a |
18 | chr16:32473096-32473146 | NHDF-neo | bronchial: | n/a |
19 | chr16:33071657-33071707 | GM12892 | blood: | n/a |
20 | chr16:33259538-33259588 | MCF10A-Er-Src | breast: | n/a |
21 | chr16:33318910-33318960 | SK-N-SH | brain: | n/a |
22 | chr16:32487825-32487875 | GM12891 | blood: | n/a |
23 | chr16:32823289-32823339 | HRCEpiC | kidney: | n/a |
24 | chr16:33071657-33071707 | MCF10A-Er-Src | breast: | n/a |
25 | chr16:32485636-32485686 | SAEC | small airway: | n/a |
26 | chr16:33038657-33038707 | HepG2 | liver: | n/a |
27 | chr16:33038657-33038707 | NH-A | brain: | n/a |
28 | chr16:32489820-32489870 | AG04450 | lung: | fetal |
29 | chr16:33297688-33297738 | HUVEC | blood vessel: | n/a |
30 | chr16:33038657-33038707 | HRPEpiC | eye: | n/a |
31 | chr16:32452502-32452552 | PrEC | prostate: | n/a |
32 | chr16:32599417-32599467 | NHDF-neo | bronchial: | n/a |
33 | chr16:32599433-32599483 | HL-60 | blood: | n/a |
34 | chr16:33319610-33319660 | HUVEC | blood vessel: | n/a |
35 | chr16:32857007-32857057 | Jurkat | blood: | n/a |
36 | chr16:32487825-32487875 | BJ | skin: | n/a |
37 | chr16:32857551-32857601 | PANC-1 | pancreas: | n/a |
38 | chr16:32452502-32452552 | ProgFib | skin: | n/a |
39 | chr16:33318910-33318960 | NHBE | bronchial: | n/a |
40 | chr16:32823289-32823339 | IMR90 | lung: | fetal |
41 | chr16:32659887-32659937 | HCT-116 | colon: | n/a |
42 | chr16:33040206-33040256 | HepG2 | liver: | n/a |
43 | chr16:32858241-32858291 | HRPEpiC | eye: | n/a |
44 | chr16:32937057-32937107 | AG10803 | skin: | n/a |
45 | chr16:33071657-33071707 | AG09319 | gingival: | n/a |
46 | chr16:33357426-33357476 | HepG2 | liver: | n/a |
47 | chr16:32822392-32822442 | HRCEpiC | kidney: | n/a |
48 | chr16:33038922-33038972 | Hela-S3 | cervix: | n/a |
49 | chr16:32936664-32936714 | BJ | skin: | n/a |
50 | chr16:33356843-33356893 | ECC-1 | luminal epithelium: | n/a |
(count:8 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:33374454..33377112-chr16:33390580..33392185,2 | MCF-7 | breast: | |
2 | chr16:33357445..33357965-chrX:123093937..123094556,2 | MCF-7 | breast: | |
3 | chr16:32951293..32951850-chr16:33618657..33619267,2 | MCF-7 | breast: | |
4 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: | |
5 | chr16:33362493..33363428-chr3:73095698..73096500,2 | MCF-7 | breast: | |
6 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: | |
7 | chr16:32876653..32877208-chr16:33618895..33619446,2 | MCF-7 | breast: | |
8 | chr16:32993835..32994354-chr16:33619041..33619624,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-1277H1.1.1-11 | chr16:32926544-32926857 | NONHSAT142052 |
2 | lnc-CTD-2144E22.5.1-37 | chr16:33263182-33263470 | NONHSAT142077 |
3 | lnc-RP11-1277H1.1.1-4 | chr16:32899139-32900195 | ENSG00000214614.2 |
4 | lnc-AC133485.1.1-2 | chr16:32626088-32626324 | XLOC_011694 |
5 | lnc-RP11-1277H1.1.1-2 | chr16:33342943-33343609 | XLOC_011696 |
6 | lnc-TP53TG3-2 | chr16:32465933-32470079 | ENSG00000261541.1 |
7 | lnc-TP53TG3-1 | chr16:32752331-32752415 | ENSG00000260845.1 |
8 | lnc-AC136428.1.1-6 | chr16:33215175-33215559 | ENSG00000260827.1 |
9 | lnc-AC136428.1.1-5 | chr16:33272554-33272594 | ENSG00000261009.1 |
10 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32899949 | ENSG00000214614.2 |
11 | lnc-AC133485.1.1-2 | chr16:32619515-32619547 | NONHSAT142021 |
12 | lnc-AC133485.1.1-2 | chr16:32626742-32626807 | NONHSAT142022 |
13 | lnc-RP11-1277H1.1.1-9 | chr16:32989782-32989827 | NONHSAT142058 |
14 | lnc-AC136428.1.1-5 | chr16:33271714-33272098 | ENSG00000261009.1 |
15 | lnc-RP11-1277H1.1.1-4 | chr16:32896515-32896578 | ENSG00000214614.2 |
16 | lnc-TP53TG3-1 | chr16:32747230-32748010 | ENSG00000260845.1 |
17 | lnc-TP53TG3-11 | chr16:32750948-32750981 | NONHSAT142041 |
18 | lnc-TP53TG3-5 | chr16:33102620-33102910 | ENSG00000260141.1 |
19 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142021 |
20 | lnc-AC133485.1.1-8 | chr16:32442004-32442108 | NONHSAT142015 |
21 | lnc-AC133485.1.1-4 | chr16:32689961-32690152 | ENSG00000260974.1 |
22 | lnc-RP11-1277H1.1.1-3 | chr16:33007112-33007188 | ENSG00000260921.1 |
23 | lnc-AC133485.1.1-3 | chr16:32674902-32675277 | ENSG00000261569.1 |
24 | lnc-AC133485.1.1-2 | chr16:32626903-32626960 | NONHSAT142022 |
25 | lnc-RP11-1277H1.1.1-3 | chr16:33006858-33006938 | ENSG00000260921.1 |
26 | lnc-AC133485.1.1-3 | chr16:32676974-32677014 | ENSG00000260311.1 |
27 | lnc-AC133485.1.1-4 | chr16:32686358-32686427 | ENSG00000260974.1 |
28 | lnc-RP11-1277H1.1.1-2 | chr16:33340193-33341795 | XLOC_011696 |
29 | lnc-RP11-1277H1.1.1-9 | chr16:32989910-32990212 | NONHSAT142058 |
30 | lnc-CTD-2144E22.5.1-37 | chr16:33263683-33264006 | NONHSAT142077 |
31 | lnc-AC133485.1.1-3 | chr16:32677470-32677854 | ENSG00000260311.1 |
32 | lnc-AC133485.1.1-2 | chr16:32616957-32617035 | NONHSAT142021 |
33 | lnc-AC133485.1.1-3 | chr16:32661076-32661211 | ENSG00000261569.1 |
34 | lnc-RP11-1277H1.1.1-3 | chr16:33007600-33008091 | ENSG00000260921.1 |
35 | lnc-TP53TG3-16 | chr16:32452294-32452480 | NONHSAT142016 |
36 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32898850 | ENSG00000214614.2 |
37 | lnc-RP11-1277H1.1.1-4 | chr16:32898371-32898495 | ENSG00000214614.2 |
38 | lnc-TP53TG3-5 | chr16:33054930-33055459 | ENSG00000260141.1 |
39 | lnc-RP11-1277H1.1.1-1 | chr16:33140637-33140721 | ENSG00000261682.1 |
40 | lnc-RP11-1277H1.1.1-7 | chr16:33141556-33141763 | NONHSAT142067 |
41 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
42 | lnc-AC133485.1.1-2 | chr16:32626742-32626953 | XLOC_011694 |
43 | lnc-AC136428.1.1-7 | chr16:33202882-33203073 | ENSG00000260419.1 |
44 | lnc-RP11-1277H1.1.1-4 | chr16:32897778-32897912 | ENSG00000214614.2 |
45 | lnc-CTD-2144E22.5.1-37 | chr16:33262848-33262894 | NONHSAT142077 |
46 | lnc-AC133485.1.1-2 | chr16:32619515-32619545 | NONHSAT142022 |
47 | lnc-AC136428.1.1-6 | chr16:33231506-33231583 | ENSG00000261507.1 |
48 | lnc-AC133485.1.1-2 | chr16:32613896-32614018 | NONHSAT142022 |
49 | lnc-TP53TG3-11 | chr16:32751296-32751487 | NONHSAT142041 |
50 | lnc-AC133485.1.1-8 | chr16:32447309-32447521 | NONHSAT142015 |
No data |
No data |
Variant related genes | Relation type |
---|---|
IGHV3OR16-8 | TF binding region |
ENSG00000260864 | TF binding region |
ENSG00000263337 | TF binding region |
ENSG00000260419 | TF binding region |
IGHV2OR16-5 | TF binding region |
ENSG00000262090 | TF binding region |
ENSG00000261111 | TF binding region |
ENSG00000261263 | TF binding region |
ENSG00000214614 | TF binding region |
TP53TG3 | TF binding region |
IGHV3OR16-10 | TF binding region |
ENSG00000260047 | TF binding region |
ENSG00000259966 | TF binding region |
ENSG00000260414 | TF binding region |
ENSG00000261108 | TF binding region |
ENSG00000259882 | TF binding region |
ENSG00000263277 | TF binding region |
ENSG00000261541 | TF binding region |
ENSG00000261682 | TF binding region |
ENSG00000260827 | TF binding region |
ENSG00000261466 | TF binding region |
ENSG00000261405 | TF binding region |
SLC6A10P | TF binding region |
ENSG00000261259 | TF binding region |
ENSG00000261507 | TF binding region |
ENSG00000260626 | TF binding region |
HERC2P5 | TF binding region |
IGHV1OR16-2 | TF binding region |
TP53TG3B | TF binding region |
ENSG00000263204 | TF binding region |
ENSG00000260610 | TF binding region |
ENSG00000260158 | TF binding region |
ENSG00000261536 | TF binding region |
ENSG00000260662 | TF binding region |
IGHV3OR16-15 | TF binding region |
IGHV3OR16-6 | TF binding region |
ENSG00000261569 | TF binding region |
ENSG00000261719 | TF binding region |
ENSG00000261200 | TF binding region |
ENSG00000261391 | TF binding region |
ENSG00000260141 | TF binding region |
ENSG00000260974 | TF binding region |
ENSG00000261009 | TF binding region |
ENSG00000262187 | TF binding region |
ENSG00000260845 | TF binding region |
ENSG00000260921 | TF binding region |
ENSG00000259934 | TF binding region |
ABCD1P3 | TF binding region |
ENSG00000260900 | TF binding region |
ENSG00000259800 | TF binding region |
PABPC1P13 | TF binding region |
TP53TG3C | TF binding region |
IGHV1OR16-4 | TF binding region |
ENSG00000260311 | TF binding region |
HERC2P8 | TF binding region |
IGHV3OR16-8 | CpG island |
ENSG00000260864 | CpG island |
ENSG00000263337 | CpG island |
ENSG00000260419 | CpG island |
IGHV2OR16-5 | CpG island |
ENSG00000262090 | CpG island |
ENSG00000261111 | CpG island |
ENSG00000261263 | CpG island |
ENSG00000214614 | CpG island |
TP53TG3 | CpG island |
IGHV3OR16-10 | CpG island |
ENSG00000260047 | CpG island |
ENSG00000259966 | CpG island |
ENSG00000260414 | CpG island |
ENSG00000261108 | CpG island |
ENSG00000259882 | CpG island |
ENSG00000263277 | CpG island |
ENSG00000261541 | CpG island |
ENSG00000261682 | CpG island |
ENSG00000260827 | CpG island |
ENSG00000261466 | CpG island |
ENSG00000261405 | CpG island |
SLC6A10P | CpG island |
ENSG00000261259 | CpG island |
ENSG00000261507 | CpG island |
ENSG00000260626 | CpG island |
HERC2P5 | CpG island |
IGHV1OR16-2 | CpG island |
TP53TG3B | CpG island |
ENSG00000263204 | CpG island |
ENSG00000260610 | CpG island |
ENSG00000260158 | CpG island |
ENSG00000261536 | CpG island |
ENSG00000260662 | CpG island |
IGHV3OR16-15 | CpG island |
IGHV3OR16-6 | CpG island |
ENSG00000261569 | CpG island |
ENSG00000261719 | CpG island |
ENSG00000261200 | CpG island |
ENSG00000261391 | CpG island |
ENSG00000260141 | CpG island |
ENSG00000260974 | CpG island |
ENSG00000261009 | CpG island |
ENSG00000262187 | CpG island |
ENSG00000260845 | CpG island |
ENSG00000260921 | CpG island |
ENSG00000259934 | CpG island |
ABCD1P3 | CpG island |
ENSG00000260900 | CpG island |
ENSG00000259800 | CpG island |
PABPC1P13 | CpG island |
TP53TG3C | CpG island |
IGHV1OR16-4 | CpG island |
ENSG00000260311 | CpG island |
HERC2P8 | CpG island |
ENSG00000101972 | chromatin interactions |
UHMK1 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs537129182 | chr16:32437097-32437098 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs549380850 | chr16:32437100-32437101 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs567631169 | chr16:32437125-32437126 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs535757196 | chr16:32437134-32437135 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs369766060 | chr16:32437138-32437139 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs78055635 | chr16:32437141-32437142 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
7 | rs181692603 | chr16:32437171-32437172 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs201887063 | chr16:32437180-32437181 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs539660292 | chr16:32437181-32437182 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs181646784 | chr16:32437184-32437185 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
11 | rs576113075 | chr16:32437192-32437193 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs199876884 | chr16:32437194-32437195 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs3913834 | chr16:32437203-32437204 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs201822222 | chr16:32438046-32438047 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs547042654 | chr16:32438048-32438049 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
16 | rs571521536 | chr16:32438075-32438076 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
17 | rs533271252 | chr16:32438110-32438111 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
18 | rs551343631 | chr16:32438146-32438147 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
19 | rs4080263 | chr16:32438164-32438165 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
20 | rs569931899 | chr16:32438171-32438172 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
21 | rs536889138 | chr16:32438173-32438174 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
22 | rs545810259 | chr16:32442007-32442008 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
23 | rs563895757 | chr16:32442012-32442013 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
24 | rs531896595 | chr16:32442030-32442031 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
25 | rs550018657 | chr16:32442049-32442050 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
26 | rs368235216 | chr16:32442053-32442054 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
27 | rs561947840 | chr16:32442089-32442090 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
28 | rs371432079 | chr16:32442093-32442094 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
29 | rs139974249 | chr16:32442105-32442106 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
30 | rs398119348 | chr16:32442107-32442108 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
31 | rs539520530 | chr16:32443003-32443004 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
32 | rs62040898 | chr16:32443006-32443007 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs62040899 | chr16:32443009-32443010 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs201652667 | chr16:32443014-32443015 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs370570878 | chr16:32443020-32443021 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs77300494 | chr16:32443041-32443042 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
37 | rs78561941 | chr16:32443053-32443054 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
38 | rs557614775 | chr16:32443058-32443059 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
39 | rs575722304 | chr16:32443082-32443083 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
40 | rs200607933 | chr16:32443125-32443126 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
41 | rs62040906 | chr16:32447350-32447351 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
42 | rs558794425 | chr16:32447351-32447352 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
43 | rs192430006 | chr16:32447363-32447364 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
44 | rs544410867 | chr16:32447390-32447391 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
45 | rs111945715 | chr16:32447397-32447398 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
46 | rs562606230 | chr16:32447408-32447409 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
47 | rs371815687 | chr16:32447413-32447414 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
48 | rs541833013 | chr16:32447451-32447452 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
49 | rs559862566 | chr16:32447487-32447488 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
50 | rs527998610 | chr16:32447504-32447505 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Bladder cancer | 21909424 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164920 | CNVD |
Autism | 19287141 | CNVD |
Schizophrenia | 20967226 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21364760 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Non-syndromic sensorineural hearing loss | 22297974 | CNVD |
Recurrent pregnancy loss | 19789632 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Glioma | 20126413 | CNVD |
Osteosarcoma | 21215367 | CNVD |
Autism | 21865298 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Breast cancer | 21509527 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
Breast cancer | 22522925 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:32472800-32474200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr16:32473000-32473400 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr16:32473200-32473600 | Active TSS | K562 | blood |
4 | chr16:32484200-32490000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
5 | chr16:32484600-32485400 | ZNF genes & repeats | Pancreas | Pancrea |
6 | chr16:32484600-32490200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
7 | chr16:32486000-32488400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
8 | chr16:32486400-32486600 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
9 | chr16:32486400-32488400 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
10 | chr16:32486600-32487400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
11 | chr16:32487200-32488600 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
12 | chr16:32487400-32487600 | ZNF genes & repeats | Rectal Mucosa Donor 29 | rectum |
13 | chr16:32487600-32488200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
14 | chr16:32488200-32488400 | Enhancers | Rectal Mucosa Donor 29 | rectum |
15 | chr16:32489400-32489600 | ZNF genes & repeats | Gastric | stomach |
16 | chr16:32494200-32494600 | ZNF genes & repeats | Adipose Nuclei | Adipose |
17 | chr16:32494200-32499600 | ZNF genes & repeats | Liver | Liver |
18 | chr16:32497400-32503200 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
19 | chr16:32500800-32501200 | ZNF genes & repeats | Liver | Liver |
20 | chr16:32500800-32501400 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
21 | chr16:32500800-32501400 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
22 | chr16:32501400-32502200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
23 | chr16:32502200-32504200 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
24 | chr16:32504600-32508200 | ZNF genes & repeats | Liver | Liver |
25 | chr16:32505200-32505800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
26 | chr16:32507000-32508000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
27 | chr16:32507800-32508000 | Bivalent/Poised TSS | Right Atrium | heart |
28 | chr16:32511200-32562600 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
29 | chr16:32513800-32526800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
30 | chr16:32513800-32564000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
31 | chr16:32513800-32572000 | ZNF genes & repeats | Liver | Liver |
32 | chr16:32514600-32561200 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
33 | chr16:32515200-32518000 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
34 | chr16:32515200-32562800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
35 | chr16:32515400-32516000 | ZNF genes & repeats | Psoas Muscle | Psoas |
36 | chr16:32515400-32518400 | ZNF genes & repeats | Brain Substantia Nigra | brain |
37 | chr16:32515600-32517800 | ZNF genes & repeats | Primary T helper memory cells from peripheral blood 2 | blood |
38 | chr16:32515600-32521600 | ZNF genes & repeats | Brain Anterior Caudate | brain |
39 | chr16:32515800-32518400 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
40 | chr16:32516200-32521600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
41 | chr16:32516200-32524200 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
42 | chr16:32516800-32517400 | Active TSS | Aorta | Aorta |
43 | chr16:32517000-32517600 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
44 | chr16:32517400-32519000 | ZNF genes & repeats | Primary T helper cells PMA-I stimulated | -- |
45 | chr16:32518000-32518600 | ZNF genes & repeats | Fetal Brain Male | brain |
46 | chr16:32518200-32519000 | Active TSS | Right Atrium | heart |
47 | chr16:32520200-32520400 | ZNF genes & repeats | Brain Substantia Nigra | brain |
48 | chr16:32520400-32523400 | ZNF genes & repeats | Psoas Muscle | Psoas |
49 | chr16:32520600-32523600 | ZNF genes & repeats | Fetal Brain Male | brain |
50 | chr16:32521000-32524200 | ZNF genes & repeats | Brain Substantia Nigra | brain |