Variant report

Variant	esv1844602
Chromosome Location	chr7:121083616-121099167
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:144)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:144 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr7:121088228-121088300	K562	blood:	n/a	n/a
2	CBX3	chr7:121089318-121089813	HCT-116	colon:	n/a	n/a
3	CEBPB	chr7:121086624-121086997	MCF-7	breast:	n/a	n/a
4	CEBPB	chr7:121085267-121085500	K562	blood:	n/a	n/a
5	CEBPB	chr7:121088651-121088811	A549	lung:	n/a	n/a
6	CEBPB	chr7:121088560-121088864	K562	blood:	n/a	n/a
7	CEBPB	chr7:121086627-121086995	MCF-7	breast:	n/a	n/a
8	CEBPB	chr7:121088635-121088813	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr7:121089506-121089624	NHEK	skin:	n/a	n/a
10	CTCF	chr7:121089520-121089670	HCM	heart:	n/a	n/a
11	CTCF	chr7:121089480-121089630	AG10803	skin:	n/a	n/a
12	CTCF	chr7:121089480-121089630	AG09319	gingival:	n/a	n/a
13	CTCF	chr7:121089381-121089741	K562	blood:	n/a	n/a
14	CTCF	chr7:121089440-121089590	HPF	lung:	n/a	n/a
15	CTCF	chr7:121089444-121089839	MCF-7	breast:	n/a	n/a
16	CTCF	chr7:121089460-121089610	BJ	skin:	n/a	n/a
17	CTCF	chr7:121089460-121089610	NHLF	lung:	n/a	n/a
18	CTCF	chr7:121089440-121089590	HCPEpiC	choroid plexus:	n/a	n/a
19	CTCF	chr7:121089460-121089610	AoAF	blood vessel:	n/a	n/a
20	CTCF	chr7:121089540-121089690	HRE	kidney:	n/a	n/a
21	CTCF	chr7:121089420-121089570	RPTEC	kidney:	n/a	n/a
22	CTCF	chr7:121089511-121089619	MCF-7	breast:	n/a	n/a
23	CTCF	chr7:121089420-121089570	HVMF	connective:	n/a	n/a
24	CTCF	chr7:121089420-121089570	HPF	lung:	n/a	n/a
25	CTCF	chr7:121089494-121089631	ProgFib	skin:	n/a	n/a
26	CTCF	chr7:121089440-121089590	SK-N-SH_RA	brain:	n/a	n/a
27	CTCF	chr7:121089480-121089630	AG09309	skin:	n/a	n/a
28	CTCF	chr7:121085260-121085410	NHEK	skin:	n/a	n/a
29	CTCF	chr7:121089460-121089610	SAEC	small airway:	n/a	n/a
30	CTCF	chr7:121089480-121089630	HEEpiC	esophagus:	n/a	n/a
31	CTCF	chr7:121089480-121089630	AoAF	blood vessel:	n/a	n/a
32	CTCF	chr7:121089440-121089590	BE2_C	brain:	n/a	n/a
33	CTCF	chr7:121089480-121089630	A549	lung:	n/a	n/a
34	CTCF	chr7:121089500-121089650	HRE	kidney:	n/a	n/a
35	CTCF	chr7:121089415-121089685	IMR90	lung:	n/a	n/a
36	CTCF	chr7:121089520-121089670	NHEK	skin:	n/a	n/a
37	CTCF	chr7:121084398-121084605	K562	blood:	n/a	n/a
38	CTCF	chr7:121089456-121089675	MCF-7	breast:	n/a	n/a
39	CTCF	chr7:121089380-121089530	HMEC	breast:	n/a	n/a
40	CTCF	chr7:121089520-121089670	MCF-7	breast:	n/a	n/a
41	CTCF	chr7:121089520-121089670	AG04449	skin:	n/a	n/a
42	CTCF	chr7:121089440-121089590	NHEK	skin:	n/a	n/a
43	CTCF	chr7:121089414-121089792	MCF-7	breast:	n/a	n/a
44	CTCF	chr7:121089340-121089490	HVMF	connective:	n/a	n/a
45	CTCF	chr7:121089557-121089608	Gliobla	brain:	n/a	n/a
46	CTCF	chr7:121089460-121089610	Caco-2	colon:	n/a	n/a
47	CTCF	chr7:121089500-121089650	HPAF	blood vessel:	n/a	n/a
48	CTCF	chr7:121089420-121089570	BJ	skin:	n/a	n/a
49	CTCF	chr7:121089520-121089616	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr7:121089440-121089590	HMEC	breast:	n/a	n/a

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:121084438..121087093-chr7:121100657..121102565,2	K562	blood:
2	chr7:121082501..121084474-chr7:121087406..121089640,2	MCF-7	breast:
3	chr7:121032211..121033758-chr7:121098171..121100350,2	K562	blood:
4	chr7:121084590..121086129-chr7:121087840..121089417,2	K562	blood:
5	chr7:121096657..121099226-chr7:121099333..121101212,2	MCF-7	breast:
6	chr7:121086464..121088878-chr7:121090558..121092067,2	K562	blood:
7	chr7:121089158..121090017-chr7:121187411..121188046,2	MCF-7	breast:
8	chr7:121086464..121088878-chr7:121090558..121092067,2	K562	blood:
9	chr7:121034708..121036424-chr7:121085034..121087096,2	K562	blood:
10	chr7:121084429..121087093-chr7:121100657..121103964,3	K562	blood:
11	chr7:121017884..121020146-chr7:121086694..121088827,2	K562	blood:
12	chr7:121091244..121093923-chr7:121101767..121103790,2	MCF-7	breast:
13	chr7:121082938..121085924-chr7:121112606..121114729,2	K562	blood:
14	chr7:121084590..121086129-chr7:121087840..121089417,2	K562	blood:
15	chr5:43040736..43042911-chr7:121084118..121086879,2	MCF-7	breast:
16	chr7:121082501..121084474-chr7:121087406..121089640,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM3C-3	chr7:121091087-121091247	NONHSAT123008

No data

Variant related genes	Relation type
ENSG00000234985	TF binding region
ENSG00000196937	chromatin interactions
ENSG00000215068	chromatin interactions

Extended variants
information (count: 581 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:581 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377511434	chr7:121083628-121083629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs74213679	chr7:121083852-121083853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74212970	chr7:121083881-121083882	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74194727	chr7:121083889-121083890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556398067	chr7:121083903-121083904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs74212827	chr7:121083910-121083911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542014687	chr7:121083915-121083916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74193255	chr7:121083918-121083919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs74202627	chr7:121083939-121083940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs67303703	chr7:121083947-121083948	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs116171174	chr7:121083968-121083969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs72499550	chr7:121083989-121083990	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs191125562	chr7:121083994-121083995	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs76361998	chr7:121083995-121083996	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs182539280	chr7:121084001-121084002	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs146329463	chr7:121084006-121084007	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs141336106	chr7:121084019-121084020	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs562726690	chr7:121084021-121084022	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs13237462	chr7:121084029-121084030	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs13224570	chr7:121084039-121084040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188461190	chr7:121084053-121084054	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs201062248	chr7:121084063-121084064	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs13237689	chr7:121084087-121084088	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs375285851	chr7:121084097-121084098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs568282969	chr7:121084109-121084110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs13237795	chr7:121084121-121084122	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs372903494	chr7:121084131-121084132	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs547432573	chr7:121084143-121084144	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs13237809	chr7:121084155-121084156	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs71546708	chr7:121084165-121084166	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs62476187	chr7:121084176-121084177	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs13237821	chr7:121084189-121084190	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs185434233	chr7:121084197-121084198	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs374675627	chr7:121084199-121084200	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs13237707	chr7:121084210-121084211	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs188944530	chr7:121084223-121084224	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs13224842	chr7:121084231-121084232	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs572571566	chr7:121084232-121084233	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs372815817	chr7:121084233-121084234	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs13237717	chr7:121084244-121084245	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs13237720	chr7:121084251-121084252	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs71172123	chr7:121084265-121084266	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs578147867	chr7:121084266-121084267	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs73221344	chr7:121084267-121084268	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs66745493	chr7:121084278-121084279	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs73717335	chr7:121084301-121084302	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs192580151	chr7:121084386-121084387	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs184727563	chr7:121084392-121084393	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs561848340	chr7:121084422-121084423	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs188310894	chr7:121084428-121084429	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Glioblastoma multiforme	21922591	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Renal cell carcinoma	18194544	CNVD
Basal cell lymphoma	21115979	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Barrett''s adenocarcinoma	18663352	CNVD

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121078600-121086600	Weak transcription	NHDF-Ad	bronchial
2	chr7:121078800-121087400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:121079000-121095800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:121081200-121086600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:121081200-121088400	Weak transcription	Left Ventricle	heart
6	chr7:121081400-121086600	Weak transcription	Adipose Nuclei	Adipose
7	chr7:121081400-121088400	Weak transcription	Placenta	Placenta
8	chr7:121081600-121086600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:121081800-121086200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:121083200-121084400	Weak transcription	Lung	lung
11	chr7:121083200-121086600	Weak transcription	NHEK	skin
12	chr7:121083200-121087600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:121086200-121088600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:121086600-121086800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:121086600-121086800	Enhancers	Fetal Muscle Leg	muscle
16	chr7:121086600-121086800	Enhancers	Right Atrium	heart
17	chr7:121086600-121087000	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:121086600-121087000	Enhancers	NHEK	skin
19	chr7:121086600-121087400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:121086600-121088000	Enhancers	Adipose Nuclei	Adipose
21	chr7:121086600-121088200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:121086600-121088200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:121086600-121088200	Enhancers	HSMM	muscle
24	chr7:121086600-121088400	Enhancers	NHDF-Ad	bronchial
25	chr7:121086800-121087200	Enhancers	Osteobl	bone
26	chr7:121086800-121087600	Weak transcription	Right Atrium	heart
27	chr7:121086800-121088000	Weak transcription	Fetal Muscle Leg	muscle
28	chr7:121086800-121088200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr7:121087000-121088400	Weak transcription	Lung	lung
30	chr7:121087200-121091800	Weak transcription	Osteobl	bone
31	chr7:121087400-121087800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:121087400-121087800	Enhancers	Colon Smooth Muscle	Colon
33	chr7:121087400-121088000	Enhancers	HUVEC	blood vessel
34	chr7:121087400-121088400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:121087600-121088200	Enhancers	Liver	Liver
36	chr7:121087600-121088200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr7:121087600-121088200	Enhancers	Fetal Lung	lung
38	chr7:121087600-121088200	Enhancers	Fetal Stomach	stomach
39	chr7:121087600-121088200	Active TSS	Right Atrium	heart
40	chr7:121087800-121088200	Weak transcription	Colon Smooth Muscle	Colon
41	chr7:121088000-121088400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr7:121088000-121088400	Flanking Active TSS	HUVEC	blood vessel
43	chr7:121088000-121088600	Enhancers	Fetal Muscle Leg	muscle
44	chr7:121088200-121088400	Enhancers	Colon Smooth Muscle	Colon
45	chr7:121088200-121089800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:121088200-121089800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:121088200-121091000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:121088400-121088600	Enhancers	HUVEC	blood vessel
49	chr7:121088400-121088800	Enhancers	Left Ventricle	heart
50	chr7:121088400-121088800	Enhancers	Lung	lung

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