Variant report
Variant | esv1845802 |
---|---|
Chromosome Location | chr10:37441537-37486764 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:76)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CTCF | chr10:37442159-37442261 | K562 | blood: | n/a | n/a |
2 | CTCF | chr10:37452481-37452521 | Medullo | brain: | n/a | n/a |
3 | CTCF | chr10:37447106-37447182 | Spleen_OC | spleen: | n/a | n/a |
4 | CTCF | chr10:37469711-37469782 | Lung_OC | lung: | n/a | n/a |
5 | CTCF | chr10:37486296-37486408 | GM13977 | blood: | n/a | n/a |
6 | CTCF | chr10:37484346-37484411 | GM20000 | blood: | n/a | n/a |
7 | CTCF | chr10:37475018-37475056 | Spleen_OC | spleen: | n/a | n/a |
8 | CTCF | chr10:37446718-37446806 | Lung_OC | lung: | n/a | n/a |
9 | CTCF | chr10:37442131-37442208 | GM20000 | blood: | n/a | n/a |
10 | CTCF | chr10:37481138-37481209 | Kidney_OC | kidney: | n/a | n/a |
11 | CTCF | chr10:37486131-37486169 | GM20000 | blood: | n/a | n/a |
12 | CTCF | chr10:37458752-37458787 | Lung_OC | lung: | n/a | n/a |
13 | CTCF | chr10:37477527-37477727 | Lung_OC | lung: | n/a | n/a |
14 | CTCF | chr10:37452696-37452762 | Kidney_OC | kidney: | n/a | n/a |
15 | E2F4 | chr10:37446270-37446422 | MCF10A-Er-Src | breast: | n/a | n/a |
16 | EP300 | chr10:37451171-37451918 | A549 | lung: | n/a | n/a |
17 | EP300 | chr10:37451298-37451858 | A549 | lung: | n/a | n/a |
18 | FOXA1 | chr10:37482293-37482719 | HepG2 | liver: | n/a | n/a |
19 | FOXA1 | chr10:37470551-37471013 | HepG2 | liver: | n/a | n/a |
20 | FOXA1 | chr10:37458759-37459221 | HepG2 | liver: | n/a | n/a |
21 | FOXA2 | chr10:37485922-37486464 | A549 | lung: | n/a | chr10:37486060-37486072 |
22 | FOXA2 | chr10:37474195-37474667 | A549 | lung: | n/a | chr10:37474292-37474304 |
23 | FOXA2 | chr10:37462328-37462875 | A549 | lung: | n/a | chr10:37462491-37462503 |
24 | FOXA2 | chr10:37459763-37460276 | A549 | lung: | n/a | n/a |
25 | FOXA2 | chr10:37459827-37460275 | A549 | lung: | n/a | n/a |
26 | FOXA2 | chr10:37471564-37472016 | A549 | lung: | n/a | n/a |
27 | FOXA2 | chr10:37451397-37451744 | A549 | lung: | n/a | chr10:37451428-37451440 |
28 | FOXA2 | chr10:37471589-37472076 | A549 | lung: | n/a | n/a |
29 | MAFF | chr10:37447788-37447979 | HepG2 | liver: | n/a | n/a |
30 | MAFK | chr10:37447782-37448058 | HepG2 | liver: | n/a | chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942 |
31 | MAFK | chr10:37447778-37447999 | HepG2 | liver: | n/a | chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942 |
32 | MAFK | chr10:37447832-37448011 | IMR90 | lung: | n/a | chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942 |
33 | NR3C1 | chr10:37471501-37472116 | A549 | lung: | n/a | chr10:37471855-37471872 |
34 | NR3C1 | chr10:37471508-37472075 | A549 | lung: | n/a | chr10:37471855-37471872 |
35 | NR3C1 | chr10:37459709-37460324 | A549 | lung: | n/a | n/a |
36 | NR3C1 | chr10:37471501-37471958 | A549 | lung: | n/a | chr10:37471855-37471872 |
37 | NR3C1 | chr10:37448651-37449170 | A549 | lung: | n/a | chr10:37448958-37448975 |
38 | NR3C1 | chr10:37471535-37472094 | A549 | lung: | n/a | chr10:37471855-37471872 |
39 | NR3C1 | chr10:37483285-37483776 | A549 | lung: | n/a | n/a |
40 | NR3C1 | chr10:37448740-37449074 | A549 | lung: | n/a | chr10:37448958-37448975 |
41 | NR3C1 | chr10:37471477-37472045 | A549 | lung: | n/a | chr10:37471855-37471872 |
42 | NR3C1 | chr10:37459709-37460166 | A549 | lung: | n/a | n/a |
43 | NR3C1 | chr10:37448652-37449197 | A549 | lung: | n/a | chr10:37448958-37448975 |
44 | NR3C1 | chr10:37483252-37483794 | A549 | lung: | n/a | n/a |
45 | NR3C1 | chr10:37483309-37483816 | A549 | lung: | n/a | n/a |
46 | NR3C1 | chr10:37459685-37460255 | A549 | lung: | n/a | n/a |
47 | NR3C1 | chr10:37448671-37449107 | A549 | lung: | n/a | chr10:37448958-37448975 |
48 | NR3C1 | chr10:37471507-37472170 | A549 | lung: | n/a | chr10:37471855-37471872 |
49 | NR3C1 | chr10:37459743-37460302 | A549 | lung: | n/a | n/a |
50 | NR3C1 | chr10:37483307-37483782 | A549 | lung: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ANKRD30A | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs551695536 | chr10:37446413-37446414 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs549137957 | chr10:37446418-37446419 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs1200884 | chr10:37446443-37446444 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs180941075 | chr10:37446479-37446480 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs140376389 | chr10:37446495-37446496 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs571533451 | chr10:37446532-37446533 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs529931373 | chr10:37446539-37446540 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs539423332 | chr10:37446544-37446545 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs185961028 | chr10:37446564-37446565 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs566563407 | chr10:37446575-37446576 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs145476073 | chr10:37446588-37446589 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs555489566 | chr10:37446594-37446595 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs544690744 | chr10:37446638-37446639 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs575390323 | chr10:37446653-37446654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs544802911 | chr10:37446702-37446703 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs558136729 | chr10:37446750-37446751 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs578178270 | chr10:37446754-37446755 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs189073311 | chr10:37446760-37446761 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs182515964 | chr10:37446761-37446762 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs1628044 | chr10:37446769-37446770 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs1628017 | chr10:37446780-37446781 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs1627967 | chr10:37446801-37446802 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs182718661 | chr10:37446811-37446812 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs1200883 | chr10:37446861-37446862 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs531498831 | chr10:37446863-37446864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs1200882 | chr10:37446872-37446873 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs564959766 | chr10:37446891-37446892 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs527568250 | chr10:37446904-37446905 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs61162278 | chr10:37446907-37446908 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
30 | rs552309251 | chr10:37446969-37446970 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs566527176 | chr10:37447007-37447008 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs535461545 | chr10:37447014-37447015 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs549028207 | chr10:37447074-37447075 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs569027327 | chr10:37447106-37447107 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs537979849 | chr10:37447119-37447120 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs2788630 | chr10:37447133-37447134 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs578138826 | chr10:37447173-37447174 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs534501426 | chr10:37447176-37447177 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs554507841 | chr10:37447177-37447178 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs573637882 | chr10:37447193-37447194 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs182897829 | chr10:37447194-37447195 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs562540977 | chr10:37447197-37447198 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs576184965 | chr10:37447198-37447199 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs560301967 | chr10:37447815-37447816 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs571664478 | chr10:37447820-37447821 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs539611471 | chr10:37447854-37447855 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs553074101 | chr10:37447858-37447859 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs547987827 | chr10:37447879-37447880 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs567893988 | chr10:37447885-37447886 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs536936475 | chr10:37447934-37447935 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Lung cancer | 18438408 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Oral cancer | 21386901 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Behavioral abnormalities | 21522184 | CNVD |
Dysmorphic features | 21522184 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Bethlem myopathy | 20302629 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hepatocellular carcinoma | 16785998 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164919 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:37446400-37447200 | Weak transcription | A549 | lung |
2 | chr10:37447800-37448400 | ZNF genes & repeats | A549 | lung |
3 | chr10:37448400-37454800 | Weak transcription | A549 | lung |
4 | chr10:37454800-37455200 | Enhancers | A549 | lung |
5 | chr10:37479600-37490800 | Weak transcription | A549 | lung |