Variant report

Variant	esv1846713
Chromosome Location	chr11:66712229-66728044
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:952)
CpG islands
(count:857)
Chromatin interactive
region (count:34)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:952 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:66725844-66725971	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:66717549-66717928	K562	blood:	n/a	n/a
3	ARID3A	chr11:66725724-66726465	K562	blood:	n/a	n/a
4	ARID3A	chr11:66724392-66724613	HepG2	liver:	n/a	n/a
5	ATF1	chr11:66725744-66726492	K562	blood:	n/a	n/a
6	ATF1	chr11:66717512-66717915	K562	blood:	n/a	n/a
7	ATF2	chr11:66725911-66726401	GM12878	blood:	n/a	n/a
8	ATF3	chr11:66717540-66717879	K562	blood:	n/a	chr11:66717672-66717686
9	ATF3	chr11:66726010-66726286	HepG2	liver:	n/a	chr11:66726032-66726052
10	ATF3	chr11:66717425-66718099	A549	lung:	n/a	chr11:66717672-66717686
11	ATF3	chr11:66725959-66726320	K562	blood:	n/a	chr11:66726032-66726052
12	ATF3	chr11:66717466-66718085	A549	lung:	n/a	chr11:66717672-66717686
13	ATF3	chr11:66725504-66725765	K562	blood:	n/a	chr11:66725671-66725680
14	BACH1	chr11:66725614-66725836	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr11:66717541-66717948	H1-hESC	embryonic stem cell:	n/a	chr11:66717695-66717709
16	BACH1	chr11:66717519-66717904	K562	blood:	n/a	chr11:66717695-66717709
17	BATF	chr11:66717561-66717805	GM12878	blood:	n/a	chr11:66717694-66717705
18	BCL3	chr11:66717453-66718230	A549	lung:	n/a	n/a
19	BCL3	chr11:66717314-66718069	A549	lung:	n/a	n/a
20	BCL3	chr11:66717446-66717814	GM12878	blood:	n/a	n/a
21	BCL3	chr11:66724866-66726681	A549	lung:	n/a	chr11:66726178-66726187
22	BCLAF1	chr11:66726004-66726484	GM12878	blood:	n/a	chr11:66726178-66726187
23	BHLHE40	chr11:66725636-66726568	HepG2	liver:	n/a	n/a
24	BHLHE40	chr11:66725731-66726484	A549	lung:	n/a	n/a
25	BHLHE40	chr11:66717562-66718015	K562	blood:	n/a	n/a
26	BHLHE40	chr11:66717596-66718006	HepG2	liver:	n/a	n/a
27	BHLHE40	chr11:66725740-66726453	GM12878	blood:	n/a	n/a
28	BHLHE40	chr11:66725318-66726642	K562	blood:	n/a	n/a
29	BHLHE40	chr11:66724273-66724457	K562	blood:	n/a	n/a
30	BHLHE40	chr11:66717639-66718009	A549	lung:	n/a	n/a
31	BHLHE40	chr11:66725866-66726419	HepG2	liver:	n/a	n/a
32	BRCA1	chr11:66726191-66726272	HepG2	liver:	n/a	n/a
33	BRCA1	chr11:66717471-66718028	Hela-S3	cervix:	n/a	n/a
34	BRCA1	chr11:66725737-66726467	Hela-S3	cervix:	n/a	n/a
35	CBX3	chr11:66725176-66725505	K562	blood:	n/a	n/a
36	CBX3	chr11:66725630-66726740	K562	blood:	n/a	n/a
37	CBX3	chr11:66717530-66717958	K562	blood:	n/a	n/a
38	CBX3	chr11:66726083-66726543	K562	blood:	n/a	n/a
39	CCNT2	chr11:66725314-66726343	K562	blood:	n/a	chr11:66726042-66726051 chr11:66726222-66726231
40	CCNT2	chr11:66717639-66717840	K562	blood:	n/a	n/a
41	CEBPB	chr11:66717513-66718109	A549	lung:	n/a	n/a
42	CEBPB	chr11:66724398-66724714	Hela-S3	cervix:	n/a	n/a
43	CEBPB	chr11:66725985-66726457	HepG2	liver:	n/a	n/a
44	CEBPB	chr11:66720020-66720147	Hela-S3	cervix:	n/a	chr11:66720068-66720079
45	CEBPB	chr11:66725782-66726411	A549	lung:	n/a	n/a
46	CEBPB	chr11:66719999-66720230	HepG2	liver:	n/a	chr11:66720068-66720079
47	CEBPB	chr11:66720806-66721105	K562	blood:	n/a	chr11:66720941-66720952 chr11:66720943-66720952 chr11:66720942-66720953
48	CEBPB	chr11:66724489-66724712	HepG2	liver:	n/a	n/a
49	CEBPB	chr11:66726140-66726427	H1-hESC	embryonic stem cell:	n/a	n/a
50	CEBPB	chr11:66725704-66726391	Hela-S3	cervix:	n/a	n/a

(count:857 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66721779-66721829	NB4	blood:	n/a
2	chr11:66722073-66722123	IMR90	lung:	fetal
3	chr11:66726233-66726283	SKMC	muscle:	n/a
4	chr11:66721779-66721829	NB4	blood:	n/a
5	chr11:66722073-66722123	IMR90	lung:	fetal
6	chr11:66726233-66726283	SKMC	muscle:	n/a
7	chr11:66724428-66724478	PANC-1	pancreas:	n/a
8	chr11:66724428-66724478	NT2-D1	testis:	n/a
9	chr11:66725860-66725910	HMEC	breast:	n/a
10	chr11:66725961-66726011	AG09319	gingival:	n/a
11	chr11:66725820-66725870	BE2_C	brain:	n/a
12	chr11:66725820-66725870	Hepatocyte	liver:	n/a
13	chr11:66725504-66725554	AG04449	skin:	fetal
14	chr11:66725504-66725554	SK-N-SH	brain:	n/a
15	chr11:66721779-66721829	NHBE	bronchial:	n/a
16	chr11:66724428-66724478	NH-A	brain:	n/a
17	chr11:66727149-66727199	Hepatocyte	liver:	n/a
18	chr11:66725961-66726011	Jurkat	blood:	n/a
19	chr11:66725905-66725955	HUVEC	blood vessel:	n/a
20	chr11:66722073-66722123	BJ	skin:	n/a
21	chr11:66725860-66725910	MCF-7	breast:	n/a
22	chr11:66725504-66725554	HNPCEpiC	eye:	n/a
23	chr11:66727149-66727199	GM19239	blood:	n/a
24	chr11:66718583-66718633	NB4	blood:	n/a
25	chr11:66722073-66722123	SKMC	muscle:	n/a
26	chr11:66722073-66722123	HCF	heart:	n/a
27	chr11:66721779-66721829	ovcar-3	ovarian:	n/a
28	chr11:66725860-66725910	SK-N-MC	brain:	n/a
29	chr11:66725820-66725870	AG04449	skin:	fetal
30	chr11:66725504-66725554	HUVEC	blood vessel:	n/a
31	chr11:66726233-66726283	HAEpiC	amniotic membrane:	n/a
32	chr11:66725892-66725942	AG04449	skin:	fetal
33	chr11:66721779-66721829	NH-A	brain:	n/a
34	chr11:66725941-66725991	Hela-S3	cervix:	n/a
35	chr11:66726268-66726318	A549	lung:	n/a
36	chr11:66726233-66726283	NHDF-neo	bronchial:	n/a
37	chr11:66725820-66725870	ProgFib	skin:	n/a
38	chr11:66724428-66724478	ECC-1	luminal epithelium:	n/a
39	chr11:66726233-66726283	AG09309	skin:	n/a
40	chr11:66724428-66724478	AG09309	skin:	n/a
41	chr11:66725504-66725554	CMK	blood:	n/a
42	chr11:66725820-66725870	HCT-116	colon:	n/a
43	chr11:66725504-66725554	ovcar-3	ovarian:	n/a
44	chr11:66726268-66726318	GM12878	blood:	n/a
45	chr11:66727149-66727199	HEEpiC	esophagus:	n/a
46	chr11:66727149-66727199	PrEC	prostate:	n/a
47	chr11:66725892-66725942	AG04450	lung:	fetal
48	chr11:66725961-66726011	HEEpiC	esophagus:	n/a
49	chr11:66725860-66725910	HUVEC	blood vessel:	n/a
50	chr11:66721779-66721829	HIPEpiC	eye:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66650729..66651559-chr11:66724173..66724729,2	MCF-7	breast:
2	chr11:66384032..66385563-chr11:66725883..66727713,2	K562	blood:
3	chr11:66701056..66704060-chr11:66725044..66728123,3	K562	blood:
4	chr11:66717949..66720273-chr11:66722592..66724676,2	MCF-7	breast:
5	chr11:66622711..66625527-chr11:66724179..66726308,4	K562	blood:
6	chr11:66722197..66724272-chr11:66822183..66824856,2	MCF-7	breast:
7	chr11:66712201..66714524-chr11:66716191..66718681,3	K562	blood:
8	chr11:66721371..66723172-chr11:66725266..66726844,2	K562	blood:
9	chr11:66716116..66718224-chr11:66789196..66791775,2	MCF-7	breast:
10	chr11:66723147..66725998-chr11:66792267..66795189,3	MCF-7	breast:
11	chr11:66701734..66705624-chr11:66714947..66717846,5	MCF-7	breast:
12	chr11:66706455..66708855-chr11:66714725..66717301,2	K562	blood:
13	chr11:66623192..66625409-chr11:66716866..66719139,2	MCF-7	breast:
14	chr11:66725526..66726124-chr4:174291160..174292122,2	Hela-S3	cervix:
15	chr11:66622451..66624283-chr11:66723652..66727104,3	K562	blood:
16	chr11:66717949..66720273-chr11:66722592..66724676,2	MCF-7	breast:
17	chr11:66688142..66690756-chr11:66716673..66718279,2	K562	blood:
18	chr11:66716353..66721317-chr11:66722953..66727183,8	K562	blood:
19	chr11:66700564..66705050-chr11:66723140..66727624,5	K562	blood:
20	chr11:66716396..66719208-chr11:66722868..66726925,5	MCF-7	breast:
21	chr11:66721198..66723530-chr11:66727175..66729084,2	K562	blood:
22	chr11:66721371..66723172-chr11:66725266..66726844,2	K562	blood:
23	chr11:66610684..66612474-chr11:66725360..66727374,2	MCF-7	breast:
24	chr11:66712970..66715747-chr11:66721336..66723431,2	K562	blood:
25	chr11:66609696..66614934-chr11:66722798..66726985,5	K562	blood:
26	chr11:66706242..66707794-chr11:66717409..66719183,2	K562	blood:
27	chr11:66701448..66703291-chr11:66722774..66724640,2	K562	blood:
28	chr11:66712628..66714524-chr11:66717181..66719524,2	K562	blood:
29	chr11:66726099..66728182-chr11:66788872..66791515,4	MCF-7	breast:
30	chr11:66698879..66700864-chr11:66717852..66719958,2	MCF-7	breast:
31	chr11:66703140..66705919-chr11:66717566..66719138,2	K562	blood:
32	chr11:66712201..66714524-chr11:66716191..66718681,3	K562	blood:
33	chr11:66712628..66714524-chr11:66717181..66719524,2	K562	blood:
34	chr11:66607838..66611911-chr11:66724380..66727140,5	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPTBN2-6	chr11:66725340-66725467	NONHSAT022367
2	lnc-SPTBN2-6	chr11:66725793-66725815	NONHSAT022367
3	lnc-SPTBN2-6	chr11:66721720-66721907	NONHSAT022367
4	lnc-SPTBN2-6	chr11:66719767-66719939	NONHSAT022367

No data

Variant related genes	Relation type
PC	TF binding region
PC	CpG island
ENSG00000173621	chromatin interactions
ENSG00000239306	chromatin interactions
ENSG00000164105	chromatin interactions
ENSG00000173227	chromatin interactions
ENSG00000248643	chromatin interactions
ENSG00000173156	chromatin interactions
ENSG00000272870	chromatin interactions
ENSG00000173653	chromatin interactions
ENSG00000266423	chromatin interactions
ENSG00000173599	chromatin interactions

Extended variants
information (count: 531 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:531 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7107365	chr11:66712310-66712311	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs568661839	chr11:66712386-66712387	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs531093649	chr11:66712467-66712468	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs551132006	chr11:66712473-66712474	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs570938743	chr11:66712492-66712493	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113829160	chr11:66712534-66712535	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs117467632	chr11:66712540-66712541	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530118097	chr11:66712577-66712578	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs138670422	chr11:66712599-66712600	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs548336466	chr11:66712771-66712772	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs35456030	chr11:66712889-66712890	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs113748384	chr11:66712893-66712894	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200171845	chr11:66712897-66712898	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs5792398	chr11:66712900-66712901	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76060760	chr11:66712902-66712903	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs76280286	chr11:66712903-66712904	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs4930398	chr11:66712923-66712924	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535741787	chr11:66712986-66712987	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs555343664	chr11:66713206-66713207	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs142903017	chr11:66713210-66713211	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs114039142	chr11:66713243-66713244	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs376884154	chr11:66713270-66713271	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs557477952	chr11:66713283-66713284	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs11607533	chr11:66713284-66713285	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs9667784	chr11:66713286-66713287	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs187799027	chr11:66713309-66713310	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs367605909	chr11:66713323-66713324	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs563804021	chr11:66713357-66713358	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs201078861	chr11:66713373-66713374	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs577309813	chr11:66713387-66713388	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs11227633	chr11:66713411-66713412	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs370344571	chr11:66713413-66713414	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs560097842	chr11:66713418-66713419	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs528857667	chr11:66713449-66713450	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs192735446	chr11:66713474-66713475	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs542527145	chr11:66713501-66713502	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs185635043	chr11:66713506-66713507	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs571068684	chr11:66713542-66713543	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs151302021	chr11:66713543-66713544	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs551189796	chr11:66713547-66713548	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs564607877	chr11:66713549-66713550	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs78734570	chr11:66713566-66713567	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs78905867	chr11:66713567-66713568	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs370780319	chr11:66713586-66713587	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs61891261	chr11:66713588-66713589	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs35838256	chr11:66713681-66713682	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs190050200	chr11:66713691-66713692	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs34276150	chr11:66713697-66713698	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs36012356	chr11:66713725-66713726	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs546728604	chr11:66713731-66713732	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung cancer	19153074	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:964 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66689200-66719400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:66694400-66718000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:66696800-66717600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:66696800-66717600	Weak transcription	NHDF-Ad	bronchial
5	chr11:66701200-66712400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:66701200-66724200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:66701600-66717600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:66701800-66717600	Weak transcription	HSMMtube	muscle
9	chr11:66701800-66719600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:66702600-66717600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:66702600-66717600	Weak transcription	Gastric	stomach
12	chr11:66702800-66717600	Weak transcription	NHEK	skin
13	chr11:66702800-66718200	Weak transcription	Fetal Brain Female	brain
14	chr11:66702800-66723600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:66703000-66717400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:66703000-66717800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:66703200-66717400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:66703200-66718400	Weak transcription	Ovary	ovary
19	chr11:66703400-66714200	Weak transcription	Adipose Nuclei	Adipose
20	chr11:66703400-66717400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:66703800-66714000	Weak transcription	Osteobl	bone
22	chr11:66704200-66717400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:66704200-66717600	Weak transcription	NHLF	lung
24	chr11:66704400-66717400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:66704400-66717600	Weak transcription	HepG2	liver
26	chr11:66705000-66717400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:66705000-66717600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:66705000-66717600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:66705200-66713600	Weak transcription	A549	lung
30	chr11:66705200-66717400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:66705600-66717200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:66706600-66719400	Weak transcription	Fetal Heart	heart
33	chr11:66707000-66717200	Weak transcription	K562	blood
34	chr11:66707400-66717800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:66707400-66717800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:66707800-66715400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:66708000-66724200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr11:66708200-66724200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:66708600-66717400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:66708600-66724200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:66708600-66724200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr11:66708800-66714200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:66708800-66718400	Weak transcription	Stomach Mucosa	stomach
44	chr11:66709000-66717800	Weak transcription	Primary T cells from cord blood	blood
45	chr11:66709200-66717600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:66709200-66719600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:66709400-66718400	Weak transcription	Fetal Intestine Small	intestine
48	chr11:66709400-66724400	Weak transcription	Brain Germinal Matrix	brain
49	chr11:66710200-66714200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:66710200-66719400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links