Variant report

Variant	esv1847869
Chromosome Location	chr10:96848203-96864595
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:157 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76656399	chr10:96848203-96848204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs183107771	chr10:96848260-96848261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550276869	chr10:96848293-96848294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs570136793	chr10:96848303-96848304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs75322972	chr10:96848349-96848350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs186764752	chr10:96848361-96848362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs565984172	chr10:96848382-96848383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534966147	chr10:96848390-96848391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190384316	chr10:96848394-96848395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs370591435	chr10:96848406-96848407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs183327446	chr10:96848437-96848438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543032781	chr10:96848441-96848442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs556662054	chr10:96848452-96848453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs75730368	chr10:96848502-96848503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540761447	chr10:96848515-96848516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs545197515	chr10:96848520-96848521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200644300	chr10:96848528-96848529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187884143	chr10:96848536-96848537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs140024092	chr10:96848565-96848566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs139373619	chr10:96848608-96848609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541743161	chr10:96848616-96848617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs192400172	chr10:96848624-96848625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182343395	chr10:96848625-96848626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs550164909	chr10:96848704-96848705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs368680983	chr10:96848715-96848716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187727685	chr10:96848728-96848729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs36071741	chr10:96848740-96848741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs367602182	chr10:96848743-96848744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs142682310	chr10:96848744-96848745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs11598823	chr10:96848749-96848750	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs565924653	chr10:96848775-96848776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs56032439	chr10:96848776-96848777	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs548495061	chr10:96848782-96848783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192719373	chr10:96848830-96848831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs552310276	chr10:96848874-96848875	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs568240397	chr10:96848938-96848939	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs34647607	chr10:96848955-96848956	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs561418070	chr10:96848956-96848957	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs397755520	chr10:96848965-96848966	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs112000955	chr10:96848966-96848967	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs374496374	chr10:96848986-96848987	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs145932417	chr10:96849011-96849012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539185911	chr10:96849021-96849022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs569193481	chr10:96849031-96849032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs572628863	chr10:96849081-96849082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs61887963	chr10:96849092-96849093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs564753622	chr10:96849101-96849102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs561641663	chr10:96849115-96849116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10128235	chr10:96849163-96849164	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs139829579	chr10:96849191-96849192	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96847600-96849000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:96848800-96849200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:96849000-96849200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:96855600-96856000	Enhancers	Gastric	stomach
5	chr10:96855800-96856400	Enhancers	Fetal Intestine Large	intestine
6	chr10:96855800-96856400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr10:96856000-96856200	Enhancers	Fetal Intestine Small	intestine
8	chr10:96856000-96856800	Enhancers	Stomach Mucosa	stomach
9	chr10:96856000-96858200	Enhancers	HepG2	liver
10	chr10:96856200-96857200	Weak transcription	Fetal Intestine Small	intestine
11	chr10:96856400-96857400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:96856400-96857600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:96856800-96857200	Weak transcription	Stomach Mucosa	stomach
14	chr10:96857200-96858000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:96857200-96858200	Enhancers	Fetal Intestine Small	intestine
16	chr10:96857200-96858200	Enhancers	Stomach Mucosa	stomach
17	chr10:96857400-96858000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:96857400-96858200	Enhancers	Liver	Liver
19	chr10:96857600-96857800	Enhancers	Gastric	stomach
20	chr10:96857600-96858200	Enhancers	Fetal Intestine Large	intestine

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