Variant report
Variant | esv1848267 |
---|---|
Chromosome Location | chr22:20370719-20500660 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1886)
- CpG islands (count:1221)
- Chromatin interactive region (count:1)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | BATF | chr22:20378235-20378418 | GM12878 | blood: | n/a | n/a |
2 | BATF | chr22:20427669-20427862 | GM12878 | blood: | n/a | n/a |
3 | BATF | chr22:20378615-20378824 | GM12878 | blood: | n/a | n/a |
4 | BATF | chr22:20379205-20379431 | GM12878 | blood: | n/a | n/a |
5 | BATF | chr22:20445015-20445218 | GM12878 | blood: | n/a | n/a |
6 | BCL11A | chr22:20460690-20460996 | GM12878 | blood: | n/a | n/a |
7 | BCL11A | chr22:20424439-20424711 | GM12878 | blood: | n/a | n/a |
8 | BHLHE40 | chr22:20460604-20460954 | HepG2 | liver: | n/a | n/a |
9 | BHLHE40 | chr22:20428314-20428573 | HepG2 | liver: | n/a | n/a |
10 | BHLHE40 | chr22:20378988-20379084 | GM12878 | blood: | n/a | n/a |
11 | BHLHE40 | chr22:20420653-20421045 | HepG2 | liver: | n/a | chr22:20420721-20420737 |
12 | BHLHE40 | chr22:20436958-20437296 | HepG2 | liver: | n/a | n/a |
13 | BHLHE40 | chr22:20378358-20378553 | HepG2 | liver: | n/a | n/a |
14 | BHLHE40 | chr22:20445081-20445367 | HepG2 | liver: | n/a | n/a |
15 | CBX3 | chr22:20420629-20421065 | K562 | blood: | n/a | n/a |
16 | CBX3 | chr22:20420272-20421095 | K562 | blood: | n/a | n/a |
17 | CBX3 | chr22:20450575-20451117 | K562 | blood: | n/a | n/a |
18 | CBX3 | chr22:20377744-20379764 | K562 | blood: | n/a | n/a |
19 | CBX3 | chr22:20460679-20461023 | K562 | blood: | n/a | n/a |
20 | CBX3 | chr22:20424749-20427337 | K562 | blood: | n/a | n/a |
21 | CBX3 | chr22:20423295-20424707 | K562 | blood: | n/a | n/a |
22 | CBX3 | chr22:20454740-20456344 | K562 | blood: | n/a | n/a |
23 | CBX3 | chr22:20444910-20445645 | K562 | blood: | n/a | n/a |
24 | CBX3 | chr22:20408901-20410101 | K562 | blood: | n/a | n/a |
25 | CBX3 | chr22:20459968-20461115 | K562 | blood: | n/a | n/a |
26 | CBX3 | chr22:20441631-20442615 | K562 | blood: | n/a | n/a |
27 | CEBPB | chr22:20437259-20437596 | K562 | blood: | n/a | n/a |
28 | CEBPB | chr22:20428730-20428899 | K562 | blood: | n/a | n/a |
29 | CEBPB | chr22:20407773-20408094 | K562 | blood: | n/a | n/a |
30 | CEBPB | chr22:20420603-20421116 | K562 | blood: | n/a | chr22:20420901-20420912 |
31 | CEBPB | chr22:20441660-20442283 | K562 | blood: | n/a | n/a |
32 | CEBPB | chr22:20447394-20447719 | K562 | blood: | n/a | n/a |
33 | CEBPB | chr22:20462825-20463220 | K562 | blood: | n/a | n/a |
34 | CEBPB | chr22:20437060-20437626 | K562 | blood: | n/a | n/a |
35 | CEBPB | chr22:20418866-20419026 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr22:20445369-20445569 | K562 | blood: | n/a | n/a |
37 | CEBPB | chr22:20417912-20418536 | K562 | blood: | n/a | n/a |
38 | CEBPB | chr22:20427068-20427414 | K562 | blood: | n/a | n/a |
39 | CEBPB | chr22:20445011-20445575 | K562 | blood: | n/a | n/a |
40 | CEBPB | chr22:20428597-20429008 | K562 | blood: | n/a | n/a |
41 | CEBPB | chr22:20418225-20418487 | K562 | blood: | n/a | n/a |
42 | CEBPD | chr22:20437199-20437678 | K562 | blood: | n/a | n/a |
43 | CEBPD | chr22:20378856-20379192 | K562 | blood: | n/a | n/a |
44 | CEBPD | chr22:20426520-20427025 | K562 | blood: | n/a | n/a |
45 | CEBPD | chr22:20441629-20442366 | K562 | blood: | n/a | n/a |
46 | CEBPD | chr22:20444985-20445622 | K562 | blood: | n/a | n/a |
47 | CEBPD | chr22:20420620-20421076 | K562 | blood: | n/a | n/a |
48 | CEBPD | chr22:20427039-20427449 | K562 | blood: | n/a | n/a |
49 | CEBPD | chr22:20427674-20428046 | K562 | blood: | n/a | n/a |
50 | CEBPD | chr22:20407743-20408227 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:20423500-20423550 | GM12892 | blood: | n/a |
2 | chr22:20423500-20423550 | GM12892 | blood: | n/a |
3 | chr22:20457884-20457934 | MCF10A-Er-Src | breast: | n/a |
4 | chr22:20381640-20381690 | HCM | heart: | n/a |
5 | chr22:20378953-20379003 | GM12891 | blood: | n/a |
6 | chr22:20462514-20462564 | NHDF-neo | bronchial: | n/a |
7 | chr22:20432168-20432218 | HMEC | breast: | n/a |
8 | chr22:20483668-20483718 | HAEpiC | amniotic membrane: | n/a |
9 | chr22:20484804-20484854 | SK-N-SH | brain: | n/a |
10 | chr22:20399974-20400024 | HEK293 | kidney: | embryo |
11 | chr22:20481341-20481391 | HIPEpiC | eye: | n/a |
12 | chr22:20376405-20376455 | HCM | heart: | n/a |
13 | chr22:20376405-20376455 | HEK293 | kidney: | embryo |
14 | chr22:20381640-20381690 | GM12891 | blood: | n/a |
15 | chr22:20384320-20384370 | AG09319 | gingival: | n/a |
16 | chr22:20384320-20384370 | NB4 | blood: | n/a |
17 | chr22:20399974-20400024 | Hela-S3 | cervix: | n/a |
18 | chr22:20485872-20485922 | GM12892 | blood: | n/a |
19 | chr22:20462514-20462564 | HRE | kidney: | n/a |
20 | chr22:20378532-20378582 | SK-N-MC | brain: | n/a |
21 | chr22:20462514-20462564 | SAEC | small airway: | n/a |
22 | chr22:20423500-20423550 | HL-60 | blood: | n/a |
23 | chr22:20400015-20400065 | NB4 | blood: | n/a |
24 | chr22:20381640-20381690 | LNCaP | prostate: | n/a |
25 | chr22:20423500-20423550 | AG09319 | gingival: | n/a |
26 | chr22:20400015-20400065 | ECC-1 | luminal epithelium: | n/a |
27 | chr22:20384320-20384370 | GM19239 | blood: | n/a |
28 | chr22:20378953-20379003 | BE2_C | brain: | n/a |
29 | chr22:20456706-20456756 | HAEpiC | amniotic membrane: | n/a |
30 | chr22:20376405-20376455 | Jurkat | blood: | n/a |
31 | chr22:20481341-20481391 | BE2_C | brain: | n/a |
32 | chr22:20423500-20423550 | AG04449 | skin: | fetal |
33 | chr22:20485872-20485922 | NH-A | brain: | n/a |
34 | chr22:20378953-20379003 | MCF-7 | breast: | n/a |
35 | chr22:20378953-20379003 | BJ | skin: | n/a |
36 | chr22:20399974-20400024 | AG04449 | skin: | fetal |
37 | chr22:20400015-20400065 | Hepatocyte | liver: | n/a |
38 | chr22:20399601-20399651 | HUVEC | blood vessel: | n/a |
39 | chr22:20456706-20456756 | Jurkat | blood: | n/a |
40 | chr22:20464947-20464997 | HepG2 | liver: | n/a |
41 | chr22:20462514-20462564 | Hepatocyte | liver: | n/a |
42 | chr22:20376405-20376455 | HPAEpiC | pulmonary alveolar: | n/a |
43 | chr22:20381640-20381690 | HRE | kidney: | n/a |
44 | chr22:20462514-20462564 | K562 | blood: | n/a |
45 | chr22:20378532-20378582 | GM19239 | blood: | n/a |
46 | chr22:20400015-20400065 | AG09319 | gingival: | n/a |
47 | chr22:20376405-20376455 | SKMC | muscle: | n/a |
48 | chr22:20462514-20462564 | GM12891 | blood: | n/a |
49 | chr22:20378953-20379003 | U87 | brain: | n/a |
50 | chr22:20376405-20376455 | SK-N-SH | brain: | n/a |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:20378583..20380116-chr22:21982503..21985257,2 | K562 | blood: |
(count:4 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RIMBP3-1 | chr22:20455669-20455969 | NONHSAT083514 |
2 | lnc-AC007663.1-5 | chr22:20420432-20420591 | XLOC_014158 |
3 | lnc-AC007663.1-5 | chr22:20404157-20404240 | XLOC_014158 |
4 | lnc-AC007663.1-5 | chr22:20401139-20401184 | XLOC_014158 |
No data |
No data |
Variant related genes | Relation type |
---|---|
CA15P2 | TF binding region |
ENSG00000235704 | TF binding region |
ENSG00000206176 | TF binding region |
ENSG00000236984 | TF binding region |
GGTLC3 | TF binding region |
ENSG00000271796 | TF binding region |
ENSG00000252571 | TF binding region |
ENSG00000252024 | TF binding region |
RIMBP3 | TF binding region |
PI4KAP1 | TF binding region |
RN7SKP131 | TF binding region |
CA15P2 | CpG island |
ENSG00000235704 | CpG island |
ENSG00000206176 | CpG island |
ENSG00000236984 | CpG island |
GGTLC3 | CpG island |
ENSG00000271796 | CpG island |
ENSG00000252571 | CpG island |
ENSG00000252024 | CpG island |
RIMBP3 | CpG island |
PI4KAP1 | CpG island |
RN7SKP131 | CpG island |
ENSG00000161179 | chromatin interactions |
E2F1 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs567742652 | chr22:20370750-20370751 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs2542834 | chr22:20370755-20370756 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs536779082 | chr22:20370791-20370792 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs553395584 | chr22:20370793-20370794 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs573322679 | chr22:20371149-20371150 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs540921776 | chr22:20371156-20371157 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs561612363 | chr22:20371173-20371174 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs558042939 | chr22:20371215-20371216 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs12163283 | chr22:20371240-20371241 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs2542835 | chr22:20371297-20371298 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs543581572 | chr22:20371354-20371355 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs563176590 | chr22:20371367-20371368 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs528944475 | chr22:20371527-20371528 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs542359039 | chr22:20371570-20371571 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs558874319 | chr22:20371965-20371966 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs545672115 | chr22:20371990-20371991 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs111910206 | chr22:20373153-20373154 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs2845467 | chr22:20373154-20373155 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs28817036 | chr22:20374243-20374244 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
20 | rs364634 | chr22:20374989-20374990 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
21 | rs455419 | chr22:20375121-20375122 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
22 | rs2542838 | chr22:20376408-20376409 | Inactive region | CpG island | 2 gene(s) | Overlapped CNVs | n/a |
23 | rs187420657 | chr22:20376435-20376436 | Inactive region | CpG island | 2 gene(s) | Overlapped CNVs | n/a |
24 | rs2542839 | chr22:20376436-20376437 | Inactive region | CpG island | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs2542840 | chr22:20376451-20376452 | Inactive region | CpG island | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs530329386 | chr22:20377081-20377082 | Enhancers | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs9606373 | chr22:20377107-20377108 | Enhancers | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
28 | rs547082951 | chr22:20377122-20377123 | Enhancers | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs566993280 | chr22:20377251-20377252 | Enhancers | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs538790825 | chr22:20377321-20377322 | Enhancers | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs552532674 | chr22:20377439-20377440 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs569201271 | chr22:20377457-20377458 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs537303488 | chr22:20377484-20377485 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs556844004 | chr22:20377585-20377586 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
35 | rs383405 | chr22:20377592-20377593 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs528279498 | chr22:20377661-20377662 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs536060938 | chr22:20377662-20377663 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs537392944 | chr22:20377679-20377680 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs422893 | chr22:20377761-20377762 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs57709467 | chr22:20377862-20377863 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs552779430 | chr22:20378103-20378104 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs112949193 | chr22:20378136-20378137 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs59604560 | chr22:20378160-20378161 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs57534452 | chr22:20378162-20378163 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs540004555 | chr22:20378187-20378188 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs572881958 | chr22:20378199-20378200 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs544818630 | chr22:20378353-20378354 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs564895273 | chr22:20378381-20378382 | Active TSS | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs575136065 | chr22:20378438-20378439 | Active TSS Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs544879469 | chr22:20378499-20378500 | Active TSS Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Velocardiofacial syndrome | 20111667 | CNVD |
Medulloblastoma | 21979893 | CNVD |
sporadic solitary meningiomas | 19589153 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Autism | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Emanuel syndrome | 21549014 | CNVD |
Digeorge syndrome | 22283845 | CNVD |
Schizophrenia | 17504246 | CNVD |
Digeorge syndrome | 18033723 | CNVD |
22q11 deletion syndrome | 17034021 | CNVD |
22q11 deletion syndrome | 22511897 | CNVD |
22q11 deletion syndrome | 16829213 | CNVD |
Autism | 22067053 | CNVD |
Autism | 19218893 | CNVD |
Biliary cancer | 22067053 | CNVD |
Congenital heart defect | 21390462 | CNVD |
Digeorge syndrome | 16617304 | CNVD |
Emanuel syndrome | 18184694 | CNVD |
Non-syndromic sensorineural hearing loss | 18184694 | CNVD |
Obsessive-compulsive disorder | 22067053 | CNVD |
Psychosis | 22067053 | CNVD |
Schizophrenia | 19415332 | CNVD |
Schizophrenia | 20587603 | CNVD |
Shprintzen syndrome | 19443537 | CNVD |
absent pulmonary valve syndrome | 16795129 | CNVD |
language delay | 22067053 | CNVD |
periventricular nodular heterotopia | 20648244 | CNVD |
renal disease | 17924346 | CNVD |
Schizophrenia | 20433910 | CNVD |
22q11 deletion syndrome | 17028864 | CNVD |
Schizophrenia | 16969581 | CNVD |
Non-syndromic sensorineural hearing loss | 17135275 | CNVD |
velo-cardio-facial syndrome | 17135275 | CNVD |
Digeorge syndrome | 18787571 | CNVD |
Autism | 18925931 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
22q11.2 microdeletion syndrome | 21547621 | CNVD |
Congenital heart defect | 21308838 | CNVD |
Digeorge syndrome | 16512914 | CNVD |
Digeorge syndrome | 20954168 | CNVD |
Nuchal translucency | 21837766 | CNVD |
Right aortic arch in the fetus | 17066500 | CNVD |
Shprintzen syndrome | 17117043 | CNVD |
Tetralogy of fallot | 17405110 | CNVD |
Velocardiofacial syndrome | 20140301 | CNVD |
Velocardiofacial syndrome | 16512914 | CNVD |
bone mass and metabolism | 20516202 | CNVD |
choanal atresia | 18209138 | CNVD |
extracardiac malformations | 17086578 | CNVD |
fetal heart defects | 21308838 | CNVD |
parathyroid gland dysfunction | 16793949 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
velopharyngeal insufficiency | 19620585 | CNVD |
Prader-willi syndrome | 20942916 | CNVD |
22q11 deletion syndrome | 17653112 | CNVD |
Chronic myelomonocytic leukemia | 16760666 | CNVD |
Non-syndromic sensorineural hearing loss | 16829213 | CNVD |
Non-syndromic sensorineural hearing loss | 16760666 | CNVD |
Chordoma | 21602918 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Congenital heart defect | 22511896 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Seminomas | 18059402 | CNVD |
Cancer | 16751803 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Acute lymphoblastic leukemia | 19100363 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Metachromatic leukodystrophy | 18421352 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21509527 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Gastric cancer | 22591714 | CNVD |
Autism | 22958593 | CNVD |
Digeorge syndrome | 16199537 | CNVD |
Schizophrenia | 22958593 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 22241247 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Schizophrenia | 21399695 | CNVD |
22q11.21 microdeletion syndrome | 19193630 | CNVD |
Cat eye syndrome | 21549014 | CNVD |
Digeorge syndrome | 21549014 | CNVD |
22q11.2 microdeletion syndrome | 22051516 | CNVD |
22q11.2 microdeletion syndrome | 18483005 | CNVD |
22q11.2 microdeletion syndrome | 19565140 | CNVD |
22q11.2 microdeletion syndrome | 20396437 | CNVD |
22q11.2 microdeletion syndrome | 21390462 | CNVD |
22q11.2 microdeletion syndrome | 21573985 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 20970697 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Congenital heart defect | 21257016 | CNVD |
Developmental delay | 18414209 | CNVD |
DiGeorge-Velo cardiofacial | 19284877 | CNVD |
Epilepsy | 20970697 | CNVD |
Heart disease | 20551144 | CNVD |
Hughes'' syndrome | 16595601 | CNVD |
Mental retardation | 18414209 | CNVD |
Okamoto syndrome | 19046188 | CNVD |
Primary immunodeficiency | 22566803 | CNVD |
Schizophrenia | 20877625 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Velocardiofacial syndrome | 17556857 | CNVD |
Velocardiofacial syndrome | 20206275 | CNVD |
Velocardiofacial syndrome | 20970697 | CNVD |
delayed speech development | 21274400 | CNVD |
velo-cardio-facial syndrome | 16511839 | CNVD |
velo-cardio-facial syndrome | 21763005 | CNVD |
22q11.2 microdeletion syndrome | 18799940 | CNVD |
Digeorge syndrome | 20877625 | CNVD |
22q11.2 microdeletion syndrome | 18923514 | CNVD |
Congenital heart defect | 22185286 | CNVD |
DiGeorge-Velo cardiofacial | 16773131 | CNVD |
Digeorge syndrome | 20186050 | CNVD |
velo-cardio-facial conotruncal-face syndrome | 20186050 | CNVD |
22q11.2 microdeletion syndrome | 22116936 | CNVD |
Disorders of sex development | 22290220 | CNVD |
22q11.2 duplication syndrome | 18923514 | CNVD |
Autism | 22095694 | CNVD |
Mental retardation | 19951919 | CNVD |
Honadal dysgenesis | 21048976 | CNVD |
Mental retardation | 16773131 | CNVD |
22q11.2 microdeletion syndrome | 22395003 | CNVD |
22q11.2 microdeletion syndrome | 18691436 | CNVD |
22q11.2 microdeletion syndrome | 18053182 | CNVD |
22q11.2 microdeletion syndrome | 18324686 | CNVD |
22q11.2 microdeletion syndrome | 20074913 | CNVD |
Congenital heart defect | 20802965 | CNVD |
Congenital heart defect | 21134246 | CNVD |
DiGeorge syndrome | 19040613 | CNVD |
DiGeorge-Velo cardiofacial | 18179902 | CNVD |
Digeorge syndrome | 18172682 | CNVD |
Digeorge syndrome | 22470819 | CNVD |
Digeorge syndrome | 21364285 | CNVD |
Neuroendocrine carcinoma | 22470819 | CNVD |
Non-syndromic sensorineural hearing loss | 20069674 | CNVD |
Smith-Magenis syndrome | 18301319 | CNVD |
Tetralogy of fallot | 19144126 | CNVD |
Velo-cardio-facial syndrome | 21364285 | CNVD |
Velocardiofacial syndrome | 18788013 | CNVD |
cardiac malformation | 20573211 | CNVD |
cardiac malformation | 18172682 | CNVD |
velo-cardio-facial syndrome | 18636631 | CNVD |
Schizophrenia | 21822266 | CNVD |
synaptic plasticity | 21368174 | CNVD |
Schizophrenia | 18043741 | CNVD |
sporadic birth defects | 19047251 | CNVD |
Autism | 19046189 | CNVD |
DiGeorge-Velo cardiofacial | 19047251 | CNVD |
Hypernasal speech | 21968682 | CNVD |
Mental retardation | 17339581 | CNVD |
diverse phenotype | 16760730 | CNVD |
Mental retardation | 20152051 | CNVD |
Breast cancer | 16608533 | CNVD |
Melanoma | 18172304 | CNVD |
Ovarian cancer | 22174824 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Autism | 19521722 | CNVD |
Digeorge syndrome | 19521722 | CNVD |
Autism | 19955444 | CNVD |
Schizophrenia | 19955444 | CNVD |
Mental retardation | 17124404 | CNVD |
Tourette syndrome | 20069037 | CNVD |
Williams-beuren syndrome | 18553513 | CNVD |
Emphysema | 19352772 | CNVD |
Schizophrenia | 17160897 | CNVD |
Cancer | 17160897 | CNVD |
Neuropsychiatric disorder | 20069037 | CNVD |
DiGeorge-Velo cardiofacial | 17597781 | CNVD |
Digeorge syndrome | 17576883 | CNVD |
Schizophrenia | 18806272 | CNVD |
Schizophrenia | 18990708 | CNVD |
Velocardiofacial syndrome | 17576883 | CNVD |
Schizophrenia | 20075378 | CNVD |
Neurodevelopmental disorder | 17015230 | CNVD |
Cancer | 17440070 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Esophageal cancer | 21851588 | CNVD |
22q11.2 deletion syndrome | 22563040 | CNVD |
cardiac septal defect | 19239688 | CNVD |
Disease | 21346257 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Developmental delay | 21147756 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Type 2 diabetes | 21526130 | CNVD |
Ependymoma | 20639864 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Prader-willi syndrome | 20588305 | CNVD |
T-cell acute lymphoblastic leukemia | 21980252 | CNVD |
22q11.22 microdeletion syndrome | 19193630 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:20377000-20377200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
2 | chr22:20377000-20377200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr22:20377000-20377400 | Enhancers | Dnd41 | blood |
4 | chr22:20377400-20378000 | Weak transcription | Dnd41 | blood |
5 | chr22:20378000-20378600 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
6 | chr22:20378000-20378600 | Active TSS | Primary hematopoietic stem cells short term culture | blood |
7 | chr22:20378000-20379000 | Active TSS | iPS-18 Cell Line | embryonic stem cell |
8 | chr22:20378000-20379000 | Active TSS | Primary monocytes fromperipheralblood | blood |
9 | chr22:20378000-20379000 | Active TSS | Primary B cells from peripheral blood | blood |
10 | chr22:20378000-20379000 | Active TSS | Primary T cells fromperipheralblood | blood |
11 | chr22:20378000-20379000 | Active TSS | Primary Natural Killer cells fromperipheralblood | blood |
12 | chr22:20378000-20379000 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
13 | chr22:20378000-20379000 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
14 | chr22:20378000-20379000 | Active TSS | Fetal Adrenal Gland | Adrenal Gland |
15 | chr22:20378000-20379000 | Active TSS | Fetal Stomach | stomach |
16 | chr22:20378000-20379000 | Active TSS | Fetal Thymus | thymus |
17 | chr22:20378000-20379000 | Active TSS | Dnd41 | blood |
18 | chr22:20378000-20379000 | Active TSS | HepG2 | liver |
19 | chr22:20378000-20379000 | Active TSS | HMEC | breast |
20 | chr22:20378000-20379200 | Active TSS | Brain Germinal Matrix | brain |
21 | chr22:20378000-20379800 | Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
22 | chr22:20378000-20380000 | Active TSS | Foreskin Keratinocyte Primary Cells skin03 | Skin |
23 | chr22:20378200-20378600 | Active TSS | Primary mononuclear cells fromperipheralblood | Blood |
24 | chr22:20378200-20378800 | Active TSS | Fetal Muscle Leg | muscle |
25 | chr22:20378200-20379000 | Active TSS | Primary T helper cells fromperipheralblood | blood |
26 | chr22:20378200-20379000 | Active TSS | Fetal Intestine Large | intestine |
27 | chr22:20378200-20379000 | Active TSS | HSMM | muscle |
28 | chr22:20378400-20378800 | Active TSS | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
29 | chr22:20378400-20378800 | Active TSS | Primary T helper 17 cells PMA-I stimulated | -- |
30 | chr22:20378400-20378800 | Active TSS | Ovary | ovary |
31 | chr22:20378400-20378800 | Active TSS | HSMMtube | muscle |
32 | chr22:20378400-20379000 | Active TSS | H9 Cell Line | embryonic stem cell |
33 | chr22:20378400-20379000 | Active TSS | HUES48 Cell Line | embryonic stem cell |
34 | chr22:20378400-20379000 | Active TSS | HUES6 Cell Line | embryonic stem cell |
35 | chr22:20378400-20379000 | Active TSS | HUES64 Cell Line | embryonic stem cell |
36 | chr22:20378400-20379000 | Active TSS | IMR90 fetal lung fibroblasts Cell Line | lung |
37 | chr22:20378400-20379000 | Active TSS | iPS-20b Cell Line | embryonic stem cell |
38 | chr22:20378400-20379000 | Active TSS | Primary T helper memory cells from peripheral blood 2 | blood |
39 | chr22:20378400-20379000 | Active TSS | Primary T helper naive cells fromperipheralblood | blood |
40 | chr22:20378400-20379000 | Active TSS | Primary T helper cells PMA-I stimulated | -- |
41 | chr22:20378400-20379000 | Active TSS | Primary T killer naive cells fromperipheralblood | blood |
42 | chr22:20378400-20379000 | Active TSS | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
43 | chr22:20378400-20379000 | Active TSS | Adipose Nuclei | Adipose |
44 | chr22:20378400-20379000 | Active TSS | Brain Cingulate Gyrus | brain |
45 | chr22:20378400-20379000 | Active TSS | Brain Hippocampus Middle | brain |
46 | chr22:20378400-20379000 | Active TSS | Colon Smooth Muscle | Colon |
47 | chr22:20378400-20379000 | Active TSS | Duodenum Smooth Muscle | Duodenum |
48 | chr22:20378400-20379000 | Active TSS | Right Atrium | heart |
49 | chr22:20378400-20379000 | Active TSS | Stomach Smooth Muscle | stomach |
50 | chr22:20378400-20379000 | Active TSS | K562 | blood |