Variant report

Variant	esv1850024
Chromosome Location	chr6:44388505-44422689
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:503)
CpG islands
(count:183)
Chromatin interactive
region (count:44)
LncRNA
region (count:1)
Mature miRNA
region (count: 1)
miRNA target
sites (count:1)

(count:503 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:44398919-44399179	K562	blood:	n/a	n/a
2	ATF3	chr6:44416907-44417223	K562	blood:	n/a	n/a
3	BCL11A	chr6:44396560-44396746	GM12878	blood:	n/a	n/a
4	CEBPB	chr6:44414619-44415124	A549	lung:	n/a	n/a
5	CEBPB	chr6:44406548-44406821	IMR90	lung:	n/a	chr6:44406678-44406689
6	CEBPB	chr6:44414736-44415000	HepG2	liver:	n/a	n/a
7	CEBPB	chr6:44420475-44420743	A549	lung:	n/a	chr6:44420588-44420599
8	CEBPB	chr6:44414414-44415004	MCF-7	breast:	n/a	n/a
9	CEBPB	chr6:44420394-44421207	IMR90	lung:	n/a	chr6:44420588-44420599
10	CEBPB	chr6:44406587-44406859	HepG2	liver:	n/a	chr6:44406678-44406689
11	CEBPB	chr6:44404150-44404374	HepG2	liver:	n/a	n/a
12	CEBPB	chr6:44420397-44420863	MCF-7	breast:	n/a	chr6:44420588-44420599
13	CEBPB	chr6:44407455-44407789	IMR90	lung:	n/a	n/a
14	CEBPB	chr6:44398209-44398460	IMR90	lung:	n/a	n/a
15	CEBPB	chr6:44420458-44420757	HepG2	liver:	n/a	chr6:44420588-44420599
16	CEBPB	chr6:44414882-44414919	K562	blood:	n/a	n/a
17	CEBPB	chr6:44414680-44415070	IMR90	lung:	n/a	n/a
18	CEBPB	chr6:44414359-44415072	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chr6:44420331-44420840	Hela-S3	cervix:	n/a	chr6:44420588-44420599
20	CEBPB	chr6:44414500-44415076	MCF-7	breast:	n/a	n/a
21	CHD1	chr6:44398728-44399236	IMR90	lung:	n/a	n/a
22	CTCF	chr6:44398600-44398750	GM12872	blood:	n/a	n/a
23	CTCF	chr6:44398838-44399248	GM12878	blood:	n/a	n/a
24	CTCF	chr6:44399280-44399430	K562	blood:	n/a	n/a
25	CTCF	chr6:44398860-44399010	WI-38	lung:	n/a	n/a
26	CTCF	chr6:44398866-44399329	MCF-7	breast:	n/a	n/a
27	CTCF	chr6:44399000-44399150	GM12865	blood:	n/a	n/a
28	CTCF	chr6:44398840-44399170	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chr6:44398898-44399197	HUVEC	blood vessel:	n/a	n/a
30	CTCF	chr6:44398980-44399130	GM12864	blood:	n/a	n/a
31	CTCF	chr6:44398914-44399178	Gliobla	brain:	n/a	n/a
32	CTCF	chr6:44412660-44412810	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr6:44398960-44399110	GM06990	blood:	n/a	n/a
34	CTCF	chr6:44398960-44399110	HCFaa	heart:	n/a	n/a
35	CTCF	chr6:44396580-44396730	NHLF	lung:	n/a	n/a
36	CTCF	chr6:44398940-44399090	SK-N-SH_RA	brain:	n/a	n/a
37	CTCF	chr6:44398980-44399130	GM12867	blood:	n/a	n/a
38	CTCF	chr6:44399020-44399170	GM12873	blood:	n/a	n/a
39	CTCF	chr6:44412680-44412830	WERI-Rb-1	eye:	n/a	n/a
40	CTCF	chr6:44403260-44403410	HEK293	kidney:	n/a	chr6:44403397-44403406 chr6:44403394-44403404 chr6:44403391-44403409 chr6:44403386-44403407
41	CTCF	chr6:44398930-44399150	GM10248	blood:	n/a	n/a
42	CTCF	chr6:44398936-44399152	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr6:44398980-44399130	HEK293	kidney:	n/a	n/a
44	CTCF	chr6:44398935-44399129	T-47D	breast:	n/a	n/a
45	CTCF	chr6:44398960-44399110	AG04449	skin:	n/a	n/a
46	CTCF	chr6:44398580-44398730	HMF	breast:	n/a	n/a
47	CTCF	chr6:44398980-44399130	MCF-7	breast:	n/a	n/a
48	CTCF	chr6:44398980-44399130	HPAF	blood vessel:	n/a	n/a
49	CTCF	chr6:44399020-44399170	WI-38	lung:	n/a	n/a
50	CTCF	chr6:44398940-44399090	HCT-116	colon:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:44420555-44420605	AG10803	skin:	n/a
2	chr6:44413609-44413659	GM19239	blood:	n/a
3	chr6:44420555-44420605	ovcar-3	ovarian:	n/a
4	chr6:44413609-44413659	NH-A	brain:	n/a
5	chr6:44396701-44396751	NHBE	bronchial:	n/a
6	chr6:44420555-44420605	GM12878	blood:	n/a
7	chr6:44420555-44420605	PrEC	prostate:	n/a
8	chr6:44396701-44396751	HCM	heart:	n/a
9	chr6:44420555-44420605	HRE	kidney:	n/a
10	chr6:44396701-44396751	AG10803	skin:	n/a
11	chr6:44413609-44413659	HUVEC	blood vessel:	n/a
12	chr6:44420555-44420605	PANC-1	pancreas:	n/a
13	chr6:44413609-44413659	SK-N-MC	brain:	n/a
14	chr6:44413609-44413659	Hela-S3	cervix:	n/a
15	chr6:44396701-44396751	Hepatocyte	liver:	n/a
16	chr6:44413609-44413659	ProgFib	skin:	n/a
17	chr6:44396701-44396751	NT2-D1	testis:	n/a
18	chr6:44413609-44413659	HNPCEpiC	eye:	n/a
19	chr6:44420555-44420605	K562	blood:	n/a
20	chr6:44413609-44413659	HRE	kidney:	n/a
21	chr6:44396701-44396751	GM12891	blood:	n/a
22	chr6:44413609-44413659	HCT-116	colon:	n/a
23	chr6:44396701-44396751	ECC-1	luminal epithelium:	n/a
24	chr6:44420555-44420605	AoSMC	blood vessel:	n/a
25	chr6:44420555-44420605	GM12891	blood:	n/a
26	chr6:44420555-44420605	HEEpiC	esophagus:	n/a
27	chr6:44396701-44396751	AG04449	skin:	fetal
28	chr6:44420555-44420605	MCF10A-Er-Src	breast:	n/a
29	chr6:44396701-44396751	SK-N-MC	brain:	n/a
30	chr6:44420555-44420605	HepG2	liver:	n/a
31	chr6:44420555-44420605	ProgFib	skin:	n/a
32	chr6:44420555-44420605	Caco-2	colon:	n/a
33	chr6:44413609-44413659	A549	lung:	n/a
34	chr6:44396701-44396751	AG09319	gingival:	n/a
35	chr6:44413609-44413659	AG04449	skin:	fetal
36	chr6:44396701-44396751	HIPEpiC	eye:	n/a
37	chr6:44420555-44420605	LNCaP	prostate:	n/a
38	chr6:44420555-44420605	GM06990	blood:	n/a
39	chr6:44413609-44413659	HEEpiC	esophagus:	n/a
40	chr6:44413609-44413659	HepG2	liver:	n/a
41	chr6:44413609-44413659	Caco-2	colon:	n/a
42	chr6:44396701-44396751	SKMC	muscle:	n/a
43	chr6:44413609-44413659	AG10803	skin:	n/a
44	chr6:44420555-44420605	HNPCEpiC	eye:	n/a
45	chr6:44396701-44396751	HCPEpiC	choroid plexus:	n/a
46	chr6:44396701-44396751	GM19239	blood:	n/a
47	chr6:44413609-44413659	NB4	blood:	n/a
48	chr6:44420555-44420605	NH-A	brain:	n/a
49	chr6:44396701-44396751	Caco-2	colon:	n/a
50	chr6:44420555-44420605	NT2-D1	testis:	n/a

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:56311038..56311651-chr6:44419905..44420425,3	MCF-7	breast:
2	chr6:44408746..44410322-chr6:44420941..44423520,2	MCF-7	breast:
3	chr6:44214200..44215858-chr6:44420760..44422389,2	K562	blood:
4	chr6:44396473..44398052-chr6:44398079..44400521,2	K562	blood:
5	chr6:44406091..44407637-chr6:44410068..44412209,2	K562	blood:
6	chr6:44391748..44393635-chr6:44395811..44398462,2	MCF-7	breast:
7	chr6:44398980..44399515-chr6:44437258..44438078,2	MCF-7	breast:
8	chr6:44387232..44389973-chr6:44398026..44400145,2	K562	blood:
9	chr6:44406091..44407637-chr6:44410068..44412209,2	K562	blood:
10	chr6:44402998..44404546-chr6:44407688..44409189,2	K562	blood:
11	chr6:44417252..44422229-chr6:44425424..44429511,4	K562	blood:
12	chr6:44396473..44398052-chr6:44398079..44400521,2	K562	blood:
13	chr6:44412103..44413730-chr6:44418202..44421080,2	MCF-7	breast:
14	chr6:44390673..44392350-chr6:44396444..44398249,2	K562	blood:
15	chr6:44397217..44399070-chr6:44421997..44424688,3	K562	blood:
16	chr6:44410364..44415906-chr6:44416897..44422592,7	K562	blood:
17	chr6:44398583..44399484-chr6:44437679..44438221,2	K562	blood:
18	chr6:44390273..44393124-chr6:44394241..44396226,2	K562	blood:
19	chr6:44391748..44393635-chr6:44395811..44398462,2	MCF-7	breast:
20	chr6:44398528..44400400-chr6:44423668..44424679,12	K562	blood:
21	chr6:44387232..44389973-chr6:44398026..44400145,2	K562	blood:
22	chr6:44389167..44391810-chr6:44391881..44393956,2	K562	blood:
23	chr6:44382268..44386801-chr6:44387364..44390498,4	MCF-7	breast:
24	chr6:44397217..44399070-chr6:44421997..44424688,3	K562	blood:
25	chr6:44410364..44415906-chr6:44416897..44422592,7	K562	blood:
26	chr6:44392433..44394528-chr6:44420421..44422468,2	K562	blood:
27	chr6:44405048..44409188-chr6:44409781..44413783,5	K562	blood:
28	chr6:44389136..44391989-chr6:44402458..44405433,2	MCF-7	breast:
29	chr6:44403977..44405888-chr6:44416360..44418391,2	K562	blood:
30	chr6:44398593..44399479-chr6:44423901..44425088,5	MCF-7	breast:
31	chr6:44392433..44394528-chr6:44420421..44422468,2	K562	blood:
32	chr6:44397467..44399070-chr6:44423188..44424780,2	K562	blood:
33	chr6:44398603..44399105-chr6:44423995..44424580,2	MCF-7	breast:
34	chr6:44403977..44405888-chr6:44416360..44418391,2	K562	blood:
35	chr6:44405048..44409188-chr6:44409781..44413783,5	K562	blood:
36	chr6:44390673..44392350-chr6:44396444..44398249,2	K562	blood:
37	chr6:44408746..44410322-chr6:44420941..44423520,2	MCF-7	breast:
38	chr6:44398616..44399525-chr6:44612781..44613634,2	MCF-7	breast:
39	chr6:44390273..44393124-chr6:44394241..44396226,2	K562	blood:
40	chr6:44391027..44393883-chr6:44436519..44438149,2	K562	blood:
41	chr6:44420357..44422515-chr6:44433684..44436230,2	K562	blood:
42	chr6:44412103..44413730-chr6:44418202..44421080,2	MCF-7	breast:
43	chr6:44279048..44280754-chr6:44413022..44414721,2	MCF-7	breast:
44	chr6:44389167..44391810-chr6:44391881..44393956,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDC5L-3	chr6:44418311-44418898	NONHSAT112963

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4642	chr6:44403387-44403408	MIMAT0019702

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CDC5L	hsa-miR-16-5p	chr6:44414719-44414740

Variant related genes	Relation type
MIR4642	TF binding region
ENSG00000267849	TF binding region
MIR4642	CpG island
ENSG00000267849	CpG island
ENSG00000096384	chromatin interactions
ENSG00000266619	chromatin interactions

Extended variants
information (count: 1264 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:1264 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9369483	chr6:44388505-44388506	Strong transcription Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11571993	chr6:44388519-44388520	Strong transcription Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs76828471	chr6:44388570-44388571	Strong transcription Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs142259541	chr6:44388587-44388588	Strong transcription Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558069613	chr6:44388641-44388642	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
6	rs192871262	chr6:44388666-44388667	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
7	rs377532014	chr6:44388738-44388739	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
8	rs184917851	chr6:44388742-44388743	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
9	rs11571994	chr6:44388751-44388752	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs368572846	chr6:44388763-44388764	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
11	rs151014820	chr6:44388764-44388765	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
12	rs139601894	chr6:44388768-44388769	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
13	rs553418289	chr6:44388780-44388781	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
14	rs11571995	chr6:44388781-44388782	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
15	rs11571996	chr6:44388840-44388841	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
16	rs370094972	chr6:44388850-44388851	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
17	rs36086023	chr6:44388869-44388870	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
18	rs11571997	chr6:44388870-44388871	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
19	rs143379843	chr6:44388937-44388938	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
20	rs111688428	chr6:44388952-44388953	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
21	rs543217295	chr6:44388987-44388988	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
22	rs11571998	chr6:44389047-44389048	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs140336913	chr6:44389085-44389086	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188739283	chr6:44389153-44389154	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs144062510	chr6:44389174-44389175	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs11571999	chr6:44389187-44389188	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs532794333	chr6:44389204-44389205	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs78998891	chr6:44389232-44389233	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs11572000	chr6:44389239-44389240	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs534260117	chr6:44389252-44389253	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs548087571	chr6:44389264-44389265	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs567730737	chr6:44389290-44389291	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs569940416	chr6:44389309-44389310	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs571571014	chr6:44389314-44389315	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs375479740	chr6:44389316-44389317	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs559917985	chr6:44389345-44389346	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs537317303	chr6:44389357-44389358	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs549180310	chr6:44389371-44389372	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs11572001	chr6:44389399-44389400	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs535105920	chr6:44389400-44389401	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs1331292	chr6:44389431-44389432	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs372036937	chr6:44389449-44389450	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs11572002	chr6:44389494-44389495	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs576168338	chr6:44389500-44389501	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs557331846	chr6:44389518-44389519	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs144936391	chr6:44389562-44389563	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs149037130	chr6:44389566-44389567	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs11572003	chr6:44389601-44389602	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs558554621	chr6:44389610-44389611	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372408585	chr6:44389633-44389634	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21720365	CNVD
Osteosarcoma	21197465	CNVD
Gastric cancer	24379144	CNVD
Neuroblastoma	18923191	CNVD
abnormal development	18461090	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
Colorectal cancer	16790693	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Systemic lupus erythematosus	19287148	CNVD
Colorectal cancer	19359472	CNVD
Multiple myeloma	16616336	CNVD
Chordoma	18071362	CNVD
Follicular lymphoma	16790693	CNVD
Osteosarcoma	19286668	CNVD
Neurocytoma	17123091	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Ovarian cancer	20844748	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	22522925	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1332 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:44376800-44398200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:44384200-44397600	Weak transcription	Small Intestine	intestine
6	chr6:44384600-44396400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:44385000-44389600	Weak transcription	Stomach Mucosa	stomach
8	chr6:44385000-44392800	Weak transcription	Right Ventricle	heart
9	chr6:44385000-44397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:44385200-44403200	Weak transcription	Gastric	stomach
11	chr6:44385400-44390000	Weak transcription	Fetal Kidney	kidney
12	chr6:44385400-44392600	Weak transcription	Fetal Brain Male	brain
13	chr6:44385600-44389600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:44385600-44392200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:44386600-44395400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr6:44386600-44409200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:44386800-44388800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:44386800-44394000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:44386800-44395600	Strong transcription	Hela-S3	cervix
20	chr6:44386800-44395800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:44386800-44397800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:44386800-44398800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:44386800-44402600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:44386800-44402600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:44386800-44402800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:44386800-44404200	Strong transcription	Fetal Thymus	thymus
27	chr6:44386800-44405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:44386800-44406400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:44386800-44408800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:44387000-44388600	Strong transcription	Stomach Smooth Muscle	stomach
31	chr6:44387000-44388800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:44387000-44388800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:44387000-44388800	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr6:44387000-44388800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:44387000-44389000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:44387000-44389000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:44387000-44389000	Strong transcription	Brain Substantia Nigra	brain
38	chr6:44387000-44389400	Strong transcription	Brain Anterior Caudate	brain
39	chr6:44387000-44389600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:44387000-44389600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:44387000-44389600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:44387000-44389600	Strong transcription	Liver	Liver
43	chr6:44387000-44389600	Strong transcription	Fetal Brain Female	brain
44	chr6:44387000-44390200	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr6:44387000-44390400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:44387000-44390400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:44387000-44391800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:44387000-44393200	Strong transcription	Thymus	Thymus
49	chr6:44387000-44393400	Strong transcription	Left Ventricle	heart
50	chr6:44387000-44393600	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links