Variant report

Variant	esv1850941
Chromosome Location	chr16:76535342-76543447
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:76542177..76544098-chr6:26155995..26158781,2	MCF-7	breast:
2	chr16:76534271..76535887-chr16:76537682..76540215,2	MCF-7	breast:
3	chr16:76534271..76535887-chr16:76537682..76540215,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168298	chromatin interactions
ENSG00000158373	chromatin interactions

Extended variants
information (count: 411 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:411 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11643145	chr16:76535342-76535343	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs546574615	chr16:76535344-76535345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138761170	chr16:76535381-76535382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368817129	chr16:76535418-76535419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs532823009	chr16:76535431-76535432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552829776	chr16:76535457-76535458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs73618160	chr16:76535483-76535484	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs548700623	chr16:76535528-76535529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568457276	chr16:76535543-76535544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533933550	chr16:76535564-76535565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553708514	chr16:76535574-76535575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs566443650	chr16:76535575-76535576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74645452	chr16:76535597-76535598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs527504255	chr16:76535608-76535609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558549679	chr16:76535611-76535612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181889173	chr16:76535612-76535613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547561010	chr16:76535616-76535617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs186597073	chr16:76535622-76535623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12929594	chr16:76535627-76535628	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs77989320	chr16:76535630-76535631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs540250344	chr16:76535649-76535650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560164739	chr16:76535652-76535653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532126624	chr16:76535654-76535655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369700515	chr16:76535655-76535656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs563028430	chr16:76535660-76535661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs531976445	chr16:76535666-76535667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548445915	chr16:76535667-76535668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568547804	chr16:76535692-76535693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191056647	chr16:76535695-76535696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113927283	chr16:76535714-76535715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570539239	chr16:76535715-76535716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539431957	chr16:76535733-76535734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373247819	chr16:76535743-76535744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs558859702	chr16:76535747-76535748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs374820134	chr16:76535765-76535766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569011704	chr16:76535766-76535767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538054925	chr16:76535778-76535779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201581692	chr16:76535782-76535783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368966155	chr16:76535823-76535824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574607874	chr16:76535834-76535835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs201693435	chr16:76535839-76535840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569294656	chr16:76535857-76535858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182130879	chr16:76535915-76535916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371172506	chr16:76535961-76535962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs562234201	chr16:76535965-76535966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs376713293	chr16:76535966-76535967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79574986	chr16:76535967-76535968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs60515495	chr16:76535978-76535979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111807996	chr16:76535981-76535982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs558290745	chr16:76535986-76535987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	24585490	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76524000-76537000	Weak transcription	Brain Substantia Nigra	brain
2	chr16:76524400-76537000	Weak transcription	Brain Anterior Caudate	brain
3	chr16:76524600-76537200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr16:76525200-76554000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr16:76525600-76535600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links