Variant report

Variant	esv1851047
Chromosome Location	chr10:19749522-19752137
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:134 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4325199	chr10:19749621-19749622	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs532046444	chr10:19749629-19749630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527860703	chr10:19749643-19749644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs115652945	chr10:19749652-19749653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs7913355	chr10:19749680-19749681	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs373987001	chr10:19749723-19749724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182858501	chr10:19749730-19749731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs560006670	chr10:19749779-19749780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375528583	chr10:19749782-19749783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569042818	chr10:19749783-19749784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573762330	chr10:19749784-19749785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138112442	chr10:19749793-19749794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574087574	chr10:19749805-19749806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs6481930	chr10:19749807-19749808	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs548071520	chr10:19749837-19749838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562462132	chr10:19749839-19749840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs142174033	chr10:19749849-19749850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs578177174	chr10:19749871-19749872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548042855	chr10:19749914-19749915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs545611979	chr10:19749929-19749930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563562454	chr10:19749951-19749952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs3904886	chr10:19749965-19749966	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs143165567	chr10:19749970-19749971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188452050	chr10:19749973-19749974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs374484848	chr10:19750015-19750016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75604231	chr10:19750021-19750022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs552735962	chr10:19750022-19750023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527427073	chr10:19750027-19750028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs148278258	chr10:19750033-19750034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565210325	chr10:19750060-19750061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs191220462	chr10:19750066-19750067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs3844351	chr10:19750071-19750072	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs77274256	chr10:19750112-19750113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs57840886	chr10:19750116-19750117	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs76717828	chr10:19750118-19750119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs567646260	chr10:19750142-19750143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs560850475	chr10:19750155-19750156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150165269	chr10:19750156-19750157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535054129	chr10:19750176-19750177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs536078419	chr10:19750181-19750182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs183129898	chr10:19750200-19750201	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs4644569	chr10:19750226-19750227	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs538956108	chr10:19750232-19750233	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567820769	chr10:19750245-19750246	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs4528215	chr10:19750252-19750253	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs4590762	chr10:19750261-19750262	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs3852453	chr10:19750279-19750280	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs76792045	chr10:19750291-19750292	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs572827499	chr10:19750333-19750334	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187665625	chr10:19750357-19750358	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19740000-19781200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19740600-19750200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19743000-19750400	Weak transcription	Fetal Intestine Small	intestine
4	chr10:19750200-19751400	Strong transcription	Fetal Intestine Large	intestine
5	chr10:19750400-19750800	Strong transcription	Fetal Intestine Small	intestine
6	chr10:19750800-19754400	Weak transcription	Fetal Intestine Small	intestine
7	chr10:19751400-19777600	Weak transcription	Fetal Intestine Large	intestine

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