Variant report

Variant	esv1851305
Chromosome Location	chr15:93429646-93446869
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1395)
CpG islands
(count:306)
Chromatin interactive
region (count:37)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1395 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:93442759-93443802	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:93435933-93436185	K562	blood:	n/a	n/a
3	ARID3A	chr15:93439133-93440311	K562	blood:	n/a	n/a
4	ARID3A	chr15:93445678-93448097	K562	blood:	n/a	n/a
5	ARID3A	chr15:93441974-93445376	K562	blood:	n/a	n/a
6	ARID3A	chr15:93441290-93441762	K562	blood:	n/a	chr15:93441351-93441367 chr15:93441350-93441366
7	ARID3A	chr15:93444043-93445592	HepG2	liver:	n/a	n/a
8	ARID3A	chr15:93446287-93447875	HepG2	liver:	n/a	n/a
9	ARID3A	chr15:93439759-93440115	HepG2	liver:	n/a	n/a
10	ATF2	chr15:93446849-93447938	H1-hESC	embryonic stem cell:	n/a	chr15:93447610-93447621 chr15:93447650-93447664
11	ATF2	chr15:93443094-93444356	GM12878	blood:	n/a	n/a
12	ATF2	chr15:93443193-93444200	GM12878	blood:	n/a	n/a
13	ATF2	chr15:93445920-93446712	GM12878	blood:	n/a	n/a
14	ATF2	chr15:93443125-93443972	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr15:93443058-93443900	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr15:93446819-93448034	H1-hESC	embryonic stem cell:	n/a	chr15:93447610-93447621 chr15:93447650-93447664
17	ATF3	chr15:93443248-93443906	A549	lung:	n/a	n/a
18	ATF3	chr15:93442555-93443952	A549	lung:	n/a	n/a
19	BACH1	chr15:93442703-93442844	K562	blood:	n/a	n/a
20	BACH1	chr15:93440414-93440518	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr15:93439110-93439125	K562	blood:	n/a	n/a
22	BACH1	chr15:93444092-93444104	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr15:93430521-93430806	K562	blood:	n/a	n/a
24	BATF	chr15:93443345-93443672	GM12878	blood:	n/a	n/a
25	BCL11A	chr15:93443348-93443638	H1-hESC	embryonic stem cell:	n/a	n/a
26	BCL3	chr15:93442722-93445065	A549	lung:	n/a	chr15:93443220-93443229
27	BCL3	chr15:93443182-93443922	A549	lung:	n/a	chr15:93443220-93443229
28	BCL3	chr15:93443076-93443867	K562	blood:	n/a	chr15:93443220-93443229
29	BCLAF1	chr15:93446676-93448710	K562	blood:	n/a	chr15:93447601-93447610
30	BCLAF1	chr15:93443280-93443975	K562	blood:	n/a	n/a
31	BCLAF1	chr15:93443125-93445001	K562	blood:	n/a	chr15:93443220-93443229
32	BCLAF1	chr15:93443280-93443945	GM12878	blood:	n/a	n/a
33	BCLAF1	chr15:93443056-93443927	GM12878	blood:	n/a	chr15:93443220-93443229
34	BCLAF1	chr15:93446795-93448527	GM12878	blood:	n/a	chr15:93447601-93447610
35	BCLAF1	chr15:93446824-93448074	K562	blood:	n/a	chr15:93447601-93447610
36	BHLHE40	chr15:93443219-93443847	K562	blood:	n/a	n/a
37	BHLHE40	chr15:93442808-93442991	K562	blood:	n/a	n/a
38	BRCA1	chr15:93443562-93443772	HepG2	liver:	n/a	n/a
39	BRCA1	chr15:93445879-93448452	Hela-S3	cervix:	n/a	n/a
40	BRCA1	chr15:93444378-93444620	HepG2	liver:	n/a	n/a
41	CBX3	chr15:93443168-93443863	K562	blood:	n/a	n/a
42	CCNT2	chr15:93445356-93445558	K562	blood:	n/a	n/a
43	CCNT2	chr15:93444941-93445141	K562	blood:	n/a	n/a
44	CCNT2	chr15:93443081-93443831	K562	blood:	n/a	chr15:93443356-93443365 chr15:93443398-93443407
45	CEBPB	chr15:93445906-93446554	IMR90	lung:	n/a	chr15:93445984-93445995
46	CEBPB	chr15:93445895-93446525	K562	blood:	n/a	chr15:93445984-93445995
47	CEBPB	chr15:93444665-93444994	A549	lung:	n/a	chr15:93444879-93444890 chr15:93444881-93444892
48	CEBPB	chr15:93443358-93444339	H1-hESC	embryonic stem cell:	n/a	chr15:93444138-93444149
49	CEBPB	chr15:93443395-93443781	HepG2	liver:	n/a	n/a
50	CEBPB	chr15:93443368-93444332	A549	lung:	n/a	chr15:93444138-93444149

(count:306 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:93442302-93442352	GM12878	blood:	n/a
2	chr15:93442302-93442352	GM12878	blood:	n/a
3	chr15:93442219-93442269	HCT-116	colon:	n/a
4	chr15:93442616-93442666	IMR90	lung:	fetal
5	chr15:93442302-93442352	ProgFib	skin:	n/a
6	chr15:93442616-93442666	U87	brain:	n/a
7	chr15:93443580-93443630	T-47D	breast:	n/a
8	chr15:93443708-93443758	HL-60	blood:	n/a
9	chr15:93443708-93443758	HCF	heart:	n/a
10	chr15:93443708-93443758	Jurkat	blood:	n/a
11	chr15:93443580-93443630	GM19239	blood:	n/a
12	chr15:93443580-93443630	HepG2	liver:	n/a
13	chr15:93442302-93442352	A549	lung:	n/a
14	chr15:93442616-93442666	PrEC	prostate:	n/a
15	chr15:93442219-93442269	HPAEpiC	pulmonary alveolar:	n/a
16	chr15:93443708-93443758	HepG2	liver:	n/a
17	chr15:93443708-93443758	PANC-1	pancreas:	n/a
18	chr15:93442219-93442269	AG04450	lung:	fetal
19	chr15:93443708-93443758	GM12891	blood:	n/a
20	chr15:93442616-93442666	AoSMC	blood vessel:	n/a
21	chr15:93442616-93442666	PANC-1	pancreas:	n/a
22	chr15:93442219-93442269	SAEC	small airway:	n/a
23	chr15:93442616-93442666	HAEpiC	amniotic membrane:	n/a
24	chr15:93443580-93443630	Hepatocyte	liver:	n/a
25	chr15:93442616-93442666	Jurkat	blood:	n/a
26	chr15:93442302-93442352	NH-A	brain:	n/a
27	chr15:93442616-93442666	RPTEC	kidney:	n/a
28	chr15:93442219-93442269	AG04449	skin:	fetal
29	chr15:93443708-93443758	NHDF-neo	bronchial:	n/a
30	chr15:93442302-93442352	HUVEC	blood vessel:	n/a
31	chr15:93443708-93443758	AG04449	skin:	fetal
32	chr15:93442302-93442352	HEEpiC	esophagus:	n/a
33	chr15:93443580-93443630	MCF-7	breast:	n/a
34	chr15:93442302-93442352	ECC-1	luminal epithelium:	n/a
35	chr15:93442616-93442666	HRPEpiC	eye:	n/a
36	chr15:93442616-93442666	AG09319	gingival:	n/a
37	chr15:93443580-93443630	SAEC	small airway:	n/a
38	chr15:93443580-93443630	CMK	blood:	n/a
39	chr15:93442302-93442352	BJ	skin:	n/a
40	chr15:93443580-93443630	AG09309	skin:	n/a
41	chr15:93443580-93443630	A549	lung:	n/a
42	chr15:93443580-93443630	HMEC	breast:	n/a
43	chr15:93442616-93442666	AG04449	skin:	fetal
44	chr15:93443708-93443758	RPTEC	kidney:	n/a
45	chr15:93442302-93442352	NB4	blood:	n/a
46	chr15:93442616-93442666	LNCaP	prostate:	n/a
47	chr15:93442219-93442269	SK-N-MC	brain:	n/a
48	chr15:93443580-93443630	NT2-D1	testis:	n/a
49	chr15:93442219-93442269	GM12892	blood:	n/a
50	chr15:93442302-93442352	RPTEC	kidney:	n/a

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93443687..93445539-chr9:91931494..91934046,2	K562	blood:
2	chr15:90808572..90809368-chr15:93443207..93444072,2	Hela-S3	cervix:
3	chr12:6579378..6579960-chr15:93443568..93444129,2	NB4	blood:
4	chr15:65588119..65588648-chr15:93443347..93443984,2	Hela-S3	cervix:
5	chr15:93352399..93352914-chr15:93441040..93441869,2	MCF-7	breast:
6	chr15:93441494..93443862-chr3:43731000..43733877,2	MCF-7	breast:
7	chr15:93425715..93426614-chr15:93442901..93444013,3	MCF-7	breast:
8	chr15:93393520..93395102-chr15:93444710..93447228,2	K562	blood:
9	chr15:93443207..93444030-chr2:85766248..85766835,2	Hela-S3	cervix:
10	chr11:62537284..62539556-chr15:93444040..93446398,2	MCF-7	breast:
11	chr10:112064196..112064972-chr15:93443501..93444068,2	NB4	blood:
12	chr15:93443364..93444002-chr9:26892582..26893189,2	HCT-116	colon:
13	chr15:93180406..93183251-chr15:93430441..93434489,3	MCF-7	breast:
14	chr11:75273247..75273818-chr15:93443589..93444438,2	Hela-S3	cervix:
15	chr14:65453880..65454656-chr15:93443237..93443983,2	Hela-S3	cervix:
16	chr15:91498274..91499230-chr15:93446602..93447366,2	Hela-S3	cervix:
17	chr15:93372787..93376736-chr15:93445833..93447508,3	K562	blood:
18	chr15:93337836..93370220-chr15:93420085..93452591,332	K562	blood:
19	chr15:93373770..93376434-chr15:93432824..93435125,2	MCF-7	breast:
20	chr10:28821014..28821784-chr15:93443526..93444077,2	Hela-S3	cervix:
21	chr15:93425941..93426518-chr15:93444043..93444607,2	MCF-7	breast:
22	chr15:93375183..93376781-chr15:93438134..93441021,2	K562	blood:
23	chr11:62622719..62625101-chr15:93432769..93434852,2	MCF-7	breast:
24	chr14:91526593..91527163-chr15:93446473..93447260,2	NB4	blood:
25	chr15:93180068..93182597-chr15:93441905..93444737,2	MCF-7	breast:
26	chr15:93433853..93436471-chr15:93483443..93485389,2	K562	blood:
27	chr15:93181102..93183442-chr15:93428358..93430400,2	MCF-7	breast:
28	chr15:93373333..93375987-chr15:93438173..93440371,2	K562	blood:
29	chr15:93338780..93342194-chr15:93442202..93446226,4	MCF-7	breast:
30	chr15:93333327..93367027-chr15:93419774..93462750,363	K562	blood:
31	chr15:93344712..93371031-chr15:93418700..93467618,365	MCF-7	breast:
32	chr15:93351212..93351920-chr15:93443188..93443775,2	Hela-S3	cervix:
33	chr15:93377060..93379186-chr15:93444151..93447492,3	K562	blood:
34	chr15:93443557..93444196-chr17:56736255..56736909,2	Hela-S3	cervix:
35	chr15:93338607..93340953-chr15:93442127..93443801,2	MCF-7	breast:
36	chr15:93345383..93371459-chr15:93416796..93454653,318	MCF-7	breast:
37	chr15:93443333..93443972-chr2:3522862..3523442,2	Hela-S3	cervix:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD2-6	chr15:93435234-93435302	ENSG00000272888.1
2	lnc-CHD2-6	chr15:93435234-93435264	ENSG00000272888.1
3	lnc-CHD2-6	chr15:93440954-93441302	ENSG00000272888.1
4	lnc-CHD2-6	chr15:93440954-93441360	ENSG00000272888.1
5	lnc-CHD2-6	chr15:93440954-93441321	NONHSAT049673
6	lnc-CHD2-6	chr15:93435234-93435302	ENSG00000272888.1
7	lnc-CHD2-6	chr15:93435234-93435302	NONHSAT049673
8	lnc-CHD2-6	chr15:93430986-93431544	ENSG00000272888.1
9	lnc-CHD2-6	chr15:93435234-93435302	ENSG00000272888.1
10	lnc-CHD2-6	chr15:93435234-93435302	NONHSAT049676
11	lnc-CHD2-6	chr15:93440954-93441205	ENSG00000272888.1
12	lnc-CHD2-6	chr15:93429399-93430215	ENSG00000272888.1
13	lnc-CHD2-6	chr15:93440954-93441977	NONHSAT049676
14	lnc-CHD2-6	chr15:93431415-93431546	NONHSAT049673

No data

Variant related genes	Relation type
CHD2	TF binding region
MIR3175	TF binding region
ENSG00000272888	TF binding region
CHD2	CpG island
MIR3175	CpG island
ENSG00000272888	CpG island
ENSG00000160746	chromatin interactions
ENSG00000100784	chromatin interactions
ENSG00000272888	chromatin interactions
ENSG00000011198	chromatin interactions
ENSG00000258527	chromatin interactions
ENSG00000258384	chromatin interactions
ENSG00000255717	chromatin interactions
ENSG00000185442	chromatin interactions
ENSG00000168906	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000258922	chromatin interactions
ENSG00000254635	chromatin interactions
ENSG00000139190	chromatin interactions
ENSG00000095787	chromatin interactions
ENSG00000162227	chromatin interactions
ENSG00000267811	chromatin interactions
ENSG00000168003	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000187742	chromatin interactions
ENSG00000133943	chromatin interactions
ENSG00000235078	chromatin interactions
ENSG00000182768	chromatin interactions
ENSG00000173575	chromatin interactions
ENSG00000119953	chromatin interactions
ENSG00000149257	chromatin interactions
ENSG00000166965	chromatin interactions
ENSG00000257365	chromatin interactions
ENSG00000120159	chromatin interactions

Extended variants
information (count: 678 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:678 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1439620	chr15:93429646-93429647	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs552365451	chr15:93429650-93429651	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
3	rs375434621	chr15:93429668-93429669	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
4	rs569267523	chr15:93429706-93429707	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
5	rs181259019	chr15:93429713-93429714	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
6	rs548534746	chr15:93429767-93429768	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
7	rs568416016	chr15:93429778-93429779	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
8	rs62023103	chr15:93429798-93429799	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
9	rs556652340	chr15:93429800-93429801	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
10	rs78347290	chr15:93429816-93429817	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
11	rs398057952	chr15:93429818-93429819	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
12	rs7169743	chr15:93429824-93429825	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
13	rs184945622	chr15:93429833-93429834	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
14	rs143103309	chr15:93429851-93429852	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
15	rs116572082	chr15:93429870-93429871	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
16	rs72041262	chr15:93429882-93429883	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
17	rs61506945	chr15:93429886-93429887	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
18	rs538754871	chr15:93429891-93429892	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
19	rs548350043	chr15:93429903-93429904	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
20	rs558355367	chr15:93429909-93429910	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
21	rs575266673	chr15:93430031-93430032	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
22	rs543888939	chr15:93430066-93430067	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
23	rs566768339	chr15:93430076-93430077	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
24	rs147068993	chr15:93430090-93430091	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
25	rs574796755	chr15:93430091-93430092	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
26	rs540525790	chr15:93430121-93430122	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
27	rs560415082	chr15:93430132-93430133	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
28	rs532327578	chr15:93430155-93430156	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
29	rs189069464	chr15:93430156-93430157	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
30	rs562861307	chr15:93430210-93430211	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
31	rs531783734	chr15:93430248-93430249	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs115980504	chr15:93430252-93430253	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs374249300	chr15:93430272-93430273	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs552458620	chr15:93430298-93430299	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs568104277	chr15:93430300-93430301	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs570379352	chr15:93430349-93430350	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs547663256	chr15:93430377-93430378	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs138452354	chr15:93430395-93430396	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs181448788	chr15:93430401-93430402	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs556690887	chr15:93430438-93430439	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs568865422	chr15:93430448-93430449	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs537907296	chr15:93430478-93430479	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs78243431	chr15:93430485-93430486	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs537464903	chr15:93430491-93430492	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs540564468	chr15:93430534-93430535	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs374383038	chr15:93430535-93430536	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs72761922	chr15:93430549-93430550	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs577037075	chr15:93430567-93430568	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs545682031	chr15:93430571-93430572	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs557676348	chr15:93430584-93430585	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:1297 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93424400-93430800	Active TSS	Aorta	Aorta
2	chr15:93425000-93431800	Active TSS	Right Atrium	heart
3	chr15:93425400-93430000	Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr15:93425400-93430000	Active TSS	Brain Hippocampus Middle	brain
5	chr15:93425400-93430000	Active TSS	HSMMtube	muscle
6	chr15:93425400-93430400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:93425400-93430800	Active TSS	Stomach Smooth Muscle	stomach
8	chr15:93425600-93429800	Active TSS	Primary T cells fromperipheralblood	blood
9	chr15:93425600-93430000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:93426400-93431600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:93426800-93430800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:93426800-93431800	Transcr. at gene 5' and 3'	Dnd41	blood
13	chr15:93426800-93432200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:93427000-93429800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:93427000-93430000	Active TSS	Fetal Brain Female	brain
16	chr15:93427000-93431400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:93427200-93433000	Weak transcription	Spleen	Spleen
18	chr15:93427200-93433600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:93427200-93433600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:93427200-93433800	Weak transcription	Gastric	stomach
21	chr15:93427200-93434000	Weak transcription	Lung	lung
22	chr15:93427200-93437800	Weak transcription	Esophagus	oesophagus
23	chr15:93427600-93430400	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:93427800-93430400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
25	chr15:93427800-93435400	Weak transcription	Small Intestine	intestine
26	chr15:93427800-93435600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
27	chr15:93428000-93433800	Weak transcription	Left Ventricle	heart
28	chr15:93428000-93434600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:93428400-93430200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
30	chr15:93428400-93430800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:93428400-93432600	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr15:93428400-93433400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
33	chr15:93428400-93434000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:93428400-93435600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:93428600-93430800	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
36	chr15:93428600-93431000	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
37	chr15:93428600-93431000	Transcr. at gene 5' and 3'	NH-A	brain
38	chr15:93428600-93431600	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
39	chr15:93428600-93437000	Weak transcription	Colonic Mucosa	Colon
40	chr15:93428600-93443600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr15:93428800-93429800	Weak transcription	Thymus	Thymus
42	chr15:93428800-93430000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr15:93428800-93430000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:93428800-93430000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr15:93428800-93430000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:93428800-93430200	Transcr. at gene 5' and 3'	HSMM	muscle
47	chr15:93428800-93430400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr15:93428800-93431000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
49	chr15:93428800-93431400	Weak transcription	Psoas Muscle	Psoas
50	chr15:93428800-93431800	Genic enhancers	Hela-S3	cervix

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