Variant report

Variant	esv18824
Chromosome Location	chr10:18841137-18862749
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:165)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:165 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:18847006-18847183	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:18850803-18851483	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:18854097-18854130	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:18855015-18855499	HepG2	liver:	n/a	n/a
5	ARID3A	chr10:18852867-18853155	HepG2	liver:	n/a	n/a
6	ARID3A	chr10:18843485-18843910	HepG2	liver:	n/a	n/a
7	BRCA1	chr10:18860127-18860500	Hela-S3	cervix:	n/a	n/a
8	BRCA1	chr10:18860126-18860500	GM12878	blood:	n/a	n/a
9	BRCA1	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
10	CEBPB	chr10:18855132-18855383	H1-hESC	embryonic stem cell:	n/a	n/a
11	CEBPB	chr10:18854245-18854618	K562	blood:	n/a	n/a
12	CHD2	chr10:18860126-18860500	GM12878	blood:	n/a	n/a
13	CHD2	chr10:18854418-18854541	Hela-S3	cervix:	n/a	n/a
14	CTCF	chr10:18860127-18860500	K562	blood:	n/a	n/a
15	CUX1	chr10:18860126-18860500	K562	blood:	n/a	n/a
16	ELK1	chr10:18860126-18860499	GM12878	blood:	n/a	n/a
17	ELK1	chr10:18848238-18848610	Hela-S3	cervix:	n/a	n/a
18	EP300	chr10:18860126-18860682	Hela-S3	cervix:	n/a	n/a
19	EP300	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
20	GTF2F1	chr10:18854245-18854618	Hela-S3	cervix:	n/a	n/a
21	GTF2F1	chr10:18860126-18860500	K562	blood:	n/a	n/a
22	GTF2F1	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
23	GTF2F1	chr10:18860127-18860500	H1-hESC	embryonic stem cell:	n/a	n/a
24	GTF2F1	chr10:18854245-18854445	H1-hESC	embryonic stem cell:	n/a	n/a
25	IKZF1	chr10:18861913-18862302	GM12878	blood:	n/a	n/a
26	IKZF1	chr10:18860104-18860520	GM12878	blood:	n/a	n/a
27	IKZF1	chr10:18845498-18849999	GM12878	blood:	n/a	n/a
28	IKZF1	chr10:18843536-18844319	GM12878	blood:	n/a	n/a
29	IKZF1	chr10:18850718-18859452	GM12878	blood:	n/a	n/a
30	IKZF1	chr10:18861079-18861348	GM12878	blood:	n/a	n/a
31	IRF3	chr10:18860126-18860500	GM12878	blood:	n/a	n/a
32	MAFF	chr10:18854245-18854590	K562	blood:	n/a	n/a
33	MAFF	chr10:18860127-18860500	K562	blood:	n/a	n/a
34	MAFK	chr10:18860126-18860499	Hela-S3	cervix:	n/a	n/a
35	MAFK	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
36	MAFK	chr10:18860126-18860500	K562	blood:	n/a	n/a
37	MAZ	chr10:18854248-18854618	K562	blood:	n/a	n/a
38	MAZ	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
39	MAZ	chr10:18862070-18862099	Hela-S3	cervix:	n/a	n/a
40	MAZ	chr10:18860127-18860500	Hela-S3	cervix:	n/a	n/a
41	MXI1	chr10:18848238-18848611	Hela-S3	cervix:	n/a	n/a
42	MXI1	chr10:18854245-18854618	Hela-S3	cervix:	n/a	n/a
43	NRF1	chr10:18860127-18860500	GM12878	blood:	n/a	n/a
44	NRF1	chr10:18841901-18841931	GM12878	blood:	n/a	n/a
45	POLR2A	chr10:18858442-18858534	GM12878	blood:	n/a	n/a
46	POLR2A	chr10:18844151-18844413	K562	blood:	n/a	n/a
47	POLR2A	chr10:18845591-18845617	MCF10A-Er-Src	breast:	n/a	n/a
48	POLR2A	chr10:18842256-18842342	K562	blood:	n/a	n/a
49	POLR2A	chr10:18852269-18852579	K562	blood:	n/a	n/a
50	POLR2A	chr10:18847509-18847700	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
NSUN6	TF binding region

Extended variants
information (count: 1397 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:1397 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116554121	chr10:18841187-18841188	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs541717591	chr10:18841217-18841218	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs560411875	chr10:18841257-18841258	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs140683324	chr10:18841300-18841301	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs528438019	chr10:18841302-18841303	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs540258031	chr10:18841339-18841340	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs565020385	chr10:18841341-18841342	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs532507812	chr10:18841345-18841346	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs550761499	chr10:18841355-18841356	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs569308158	chr10:18841447-18841448	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs527434828	chr10:18841453-18841454	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs576537592	chr10:18841545-18841546	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs145527483	chr10:18841558-18841559	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs548567369	chr10:18841565-18841566	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs567176442	chr10:18841571-18841572	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs533749575	chr10:18841581-18841582	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs552236326	chr10:18841588-18841589	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs113585051	chr10:18841604-18841605	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs146060548	chr10:18841619-18841620	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs543910246	chr10:18841639-18841640	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs139720667	chr10:18841640-18841641	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs200375107	chr10:18841655-18841656	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs190167522	chr10:18841668-18841669	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs570987921	chr10:18841673-18841674	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs149932212	chr10:18841758-18841759	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs151279447	chr10:18841761-18841762	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs535658489	chr10:18841774-18841775	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs553758936	chr10:18841782-18841783	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs10828906	chr10:18841795-18841796	Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs371192997	chr10:18841868-18841869	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs62648395	chr10:18841887-18841888	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs185392102	chr10:18841892-18841893	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs576833069	chr10:18841898-18841899	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs62648396	chr10:18841927-18841928	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs148552846	chr10:18841959-18841960	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs563017122	chr10:18841979-18841980	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs530206562	chr10:18841987-18841988	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs548793572	chr10:18842003-18842004	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs147735124	chr10:18842044-18842045	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs528032631	chr10:18842045-18842046	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs111208083	chr10:18842047-18842048	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs541224719	chr10:18842059-18842060	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs537855517	chr10:18842065-18842066	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs549581941	chr10:18842074-18842075	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs9418530	chr10:18842087-18842088	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs568173816	chr10:18842102-18842103	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs144974510	chr10:18842107-18842108	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs553971485	chr10:18842109-18842110	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs572002797	chr10:18842118-18842119	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs376027399	chr10:18842147-18842148	ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Olfactory neuroblastoma	18408657	CNVD

Chromatin state (count:492 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18841800	Strong transcription	Liver	Liver
3	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
4	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:18824200-18850600	Weak transcription	NHLF	lung
8	chr10:18825600-18841800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:18827200-18842000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:18827200-18845200	Weak transcription	NHEK	skin
11	chr10:18827400-18841600	Weak transcription	HMEC	breast
12	chr10:18828600-18841600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:18828600-18841600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:18828600-18841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:18828600-18841800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:18828600-18841800	Weak transcription	Pancreas	Pancrea
17	chr10:18828600-18843000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:18828600-18843400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:18828600-18844400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:18828600-18845400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:18828800-18846000	Weak transcription	Spleen	Spleen
22	chr10:18829000-18841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:18829200-18851200	Weak transcription	Esophagus	oesophagus
24	chr10:18829800-18844000	Weak transcription	Brain Angular Gyrus	brain
25	chr10:18830000-18842000	Weak transcription	Fetal Brain Female	brain
26	chr10:18830000-18842400	Weak transcription	Brain Germinal Matrix	brain
27	chr10:18830200-18841400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:18830200-18841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:18830200-18841800	Weak transcription	Aorta	Aorta
30	chr10:18830200-18851000	Weak transcription	Thymus	Thymus
31	chr10:18830400-18841600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr10:18830400-18841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr10:18830400-18841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:18830400-18841800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:18830400-18841800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:18830400-18841800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:18830400-18841800	Weak transcription	Brain Substantia Nigra	brain
38	chr10:18830400-18841800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:18830400-18843000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:18830400-18856600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:18830600-18841600	Weak transcription	Fetal Lung	lung
42	chr10:18830600-18841800	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:18830600-18841800	Weak transcription	Placenta	Placenta
44	chr10:18830600-18841800	Weak transcription	Gastric	stomach
45	chr10:18830600-18842200	Weak transcription	Small Intestine	intestine
46	chr10:18830600-18845000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:18830600-18846600	Weak transcription	NH-A	brain
48	chr10:18831000-18841800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:18831000-18846000	Weak transcription	Lung	lung
50	chr10:18831000-18850200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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