Variant report
| Variant | esv19092 |
|---|---|
| Chromosome Location | chr10:37694906-37696073 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs577666072 | chr10:37694914-37694915 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs376897945 | chr10:37694947-37694948 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs539996261 | chr10:37694962-37694963 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs184070525 | chr10:37694966-37694967 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs147636417 | chr10:37695017-37695018 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs61140604 | chr10:37695122-37695123 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs552471506 | chr10:37695136-37695137 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs571682412 | chr10:37695139-37695140 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs555771212 | chr10:37695163-37695164 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs188416274 | chr10:37695190-37695191 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs112343341 | chr10:37695199-37695200 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs113209310 | chr10:37695230-37695231 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs558175336 | chr10:37695259-37695260 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs60661309 | chr10:37695343-37695344 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs575553580 | chr10:37695417-37695418 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs556754305 | chr10:37695550-37695551 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs151186303 | chr10:37695666-37695667 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs140205247 | chr10:37695696-37695697 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs571710097 | chr10:37695699-37695700 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs540670002 | chr10:37695714-37695715 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs560535252 | chr10:37695745-37695746 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs574509875 | chr10:37695785-37695786 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:41)
| Disease | PMID | Source |
|---|---|---|
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Bethlem myopathy | 20302629 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Hepatocellular carcinoma | 16785998 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Lung cancer | 21569311 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37693400-37695800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
